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(-) Description

Title :  CRYSTAL STRUCTURE OF THE FLAGELLAR ASSEMBLY FACTOR FLIW
 
Authors :  F. Altegoer, G. Bange
Date :  08 Sep 15  (Deposition) - 07 Sep 16  (Release) - 21 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Translation, Flagellum, Assembly Factor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Altegoer, S. A. Rensing, G. Bange
Structural Basis For The Csra-Dependent Modulation Of Translation Initiation By An Ancient Regulatory Protein.
Proc. Natl. Acad. Sci. Usa V. 113 10168 2016
PubMed-ID: 27551070  |  Reference-DOI: 10.1073/PNAS.1602425113

(-) Compounds

Molecule 1 - FLAGELLAR ASSEMBLY FACTOR FLIW
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET24D(+)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FLIW, GTNG_3059
    Mutation: YES
    Organism Scientific: GEOBACILLUS THERMODENITRIFICANS
    Organism Taxid: 33940

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5DMD)

(-) Sites  (0, 0)

(no "Site" information available for 5DMD)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DMD)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asp A:99 -Pro A:100

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DMD)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee.......ee.hhhhhee............eeeeee....eeeeee......eeeee.hhhh........hhhhhhhh...hhh.eeeeeeee...hhhh.ee.....eeee....eeee...........ee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5dmd A   1 GKIATKYHGDIEIHEKDIVRFEQGIPGFLEEKQFVLLQLETPFIILQSVNTPALGFVLIEPFSYFPTYEIDLDDNTLEQLQITGEQDVALYVILTVADPFDDTTANLQAPIVINVHKRLGKQVILTNTNYKTKHRLFPEKVAKH 145
                                    10        20        30        40|       51        61        71        81        91       101       111       121       131       141    
                                                                  40|                                                                                                       
                                                                   42                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.......ee.hhhhhee............eeeeee.....eeeee......eeeeehhhhh........hhhhhhhh...hhh.eeeeeeee...hhhh.ee.....eeee....eeee...........ee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dmd B   1 GKIATKYHGDIEIHEKDIVRFEQGIPGFLEEKQFVLLQLETPFIILQSVNTPALGFVLIEPFSYFPTYEIDLDDNTLEQLQITGEQDVALYVILTVADPFDDTTANLQAPIVINVHKRLGKQVILTNTNYKTKHRLFPEKV 142
                                    10        20        30        40|       51        61        71        81        91       101       111       121       131       141 
                                                                  40|                                                                                                    
                                                                   42
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DMD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DMD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DMD)

(-) Gene Ontology  (3, 3)

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    Asp A:99 - Pro A:100   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FLIW_GEOTN | A4ISV0: 5dmb 5jak

(-) Related Entries Specified in the PDB File

5dmb 5DMB CONTAINS THE SAME PROTEIN IN COMPLEX WITH THE CARBON STORAGE REGULATOR A