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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PLANTAZOLICIN METHYLTRANSFERASE BPUML IN COMPLEX WITH PENTAZOLIC DESMETHYLPZN ANALOG AND SAH
 
Authors :  Y. Hao, S. K. Nair
Date :  07 Sep 15  (Deposition) - 23 Sep 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  N-Methyltransferase, Plantazolicin, Pentazolic Desmethylpzn Analog, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Hao, P. M. Blair, A. Sharma, D. A. Mitchell, S. K. Nair
Insights Into Methyltransferase Specificity And Bioactivity Of Derivatives Of The Antibiotic Plantazolicin.
Acs Chem. Biol. V. 10 1209 2015
PubMed-ID: 25635336  |  Reference-DOI: 10.1021/CB501042A

(-) Compounds

Molecule 1 - METHYLTRANSFERASE DOMAIN FAMILY
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA 2
    Expression System Taxid: 562
    Gene: BAT_2465
    Organism Scientific: BACILLUS PUMILUS ATCC 7061
    Organism Taxid: 536229

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
15DA1Ligand/Ion1-[(4S)-4-(4-{4-[4-(5,5'-DIMETHYL-2,4'-BI-1,3-OXAZOL-2'-YL)-1,3-THIAZOL-2-YL]-5-METHYL-1,3-OXAZOL-2-YL}-1,3-THIAZOL-2-YL)-4-(METHYLAMINO)BUTYL]GUANIDINE
2GOL1Ligand/IonGLYCEROL
3SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:17 , PHE A:20 , ARG A:41 , GLY A:67 , ASP A:90 , SER A:91 , ASP A:112 , ILE A:113 , HIS A:129 , PHE A:135 , GOL A:301 , 5DA A:302 , HOH A:405 , HOH A:410 , HOH A:430 , HOH A:431 , HOH A:442binding site for residue SAH A 300
2AC2SOFTWAREPHE A:135 , GLU A:136 , ASN A:137 , LEU A:141 , SAH A:300 , HOH A:403binding site for residue GOL A 301
3AC3SOFTWAREPHE A:20 , TYR A:32 , ASP A:33 , THR A:37 , THR A:40 , LEU A:130 , GLY A:133 , ASP A:159 , TYR A:180 , ILE A:181 , GLN A:184 , SER A:188 , GLN A:246 , TYR A:247 , SAH A:300 , HOH A:476binding site for residue 5DA A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DM4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DM4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DM4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DM4)

(-) Exons   (0, 0)

(no "Exon" information available for 5DM4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeeeee.hhhhhhhhhhh....eeee.hhhhh......eeeeeee.hhhhh.hhhhhhhhhh..eeeeeeeeeeee...hhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhhhhhhh.......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dm4 A   2 IQEKIKELEVKRALAQSWFSDPDKRKISSNYDNRETPFTRFLSAETFTSYYQLTFKKTPVSILDIGCGQGQMLEYISKQLPLADLTGIDSSEEAIHCANKLNIKANFICTDIKNFSSHAKIYDVILIHLCFGLFENPIELLEQLLPYLSNESMIYIVDLNRDSIESGLSSVQSKEEELYIYDQYHASLTLSEFEQLLTYITKPREDMMYKIGTSIIGGFSPFSMEFLSLIGNGNLQQTLRQAPDQYVLLHAWLIKNR 258
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DM4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DM4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DM4)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B4ADV2_BACPA | B4ADV2: 4kwc 5dm1 5dm2

(-) Related Entries Specified in the PDB File

5dly 5dm1 5dm2