5DJU - JenaLib

Title :   CRYSTAL STRUCTURE OF LOV2 (C450A) DOMAIN IN COMPLEX WITH ZDK3

Authors :   M. Tarnawski, H. Wang, H. Yumerefendi, K. M. Hahn, I. Schlichting

Date :   02 Sep 15 (Deposition) - 20 Jul 16 (Release) - 07 Sep 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Protein Binding, Protein Engineering, Signaling Protein, Photoswitch, Light-Induced Signal Transduction, Lov2, Affibody, Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Wang, M. Vilela, A. Winkler, M. Tarnawski, I. Schlichting, H. Yumerefendi, B. Kuhlman, R. Liu, G. Danuser, K. M. Hahn
Lovtrap: An Optogenetic System For Photoinduced Protein Dissociation.
Nat. Methods V. 13 755 2016
PubMed-ID: 27427858 | Reference-DOI: 10.1038/NMETH.3926

Compounds

Molecule 1 - ENGINEERED PROTEIN, ZDK3 AFFIBODY
	Chains	:	B, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	STAPHYLOCOCCUS AUREUS
	Organism Taxid	:	1280

Molecule 2 - NPH1-2
	Chains	:	A, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 404-546
	Gene	:	NPH1-2
	Mutation	:	YES
	Organism Common	:	OAT
	Organism Scientific	:	AVENA SATIVA
	Organism Taxid	:	4498

Structural Features

Chains, Units

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 7)

Asymmetric Unit (2, 7)

No.	Name	Count	Type	Full Name
1	CL	5	Ligand/Ion	CHLORIDE ION
2	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	FMN	1	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	FMN	1	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Sites (7, 7)

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:416 , THR A:418 , ASN A:425 , ASN A:449 , ALA A:450 , ARG A:451 , LEU A:453 , GLN A:454 , VAL A:463 , ARG A:467 , ILE A:470 , LEU A:480 , ASN A:482 , ASN A:492 , PHE A:494 , PHE A:509 , GLY A:511 , GLN A:513 , CL A:603 , HOH A:714 , HOH A:724 , HOH A:730 , FMN C:601 , HOH C:712	binding site for residue FMN A 601
2	AC2	SOFTWARE	TRP B:18 , THR A:407 , ARG A:410	binding site for residue CL A 602
3	AC3	SOFTWARE	ASN A:425 , ASN A:449 , FMN A:601	binding site for residue CL A 603
4	AC4	SOFTWARE	ARG A:410 , GLU D:25	binding site for residue CL A 604
5	AC5	SOFTWARE	ARG A:451 , FMN A:601 , VAL C:416 , THR C:418 , ASN C:425 , ASN C:449 , ALA C:450 , ARG C:451 , LEU C:453 , GLN C:454 , VAL C:463 , ILE C:466 , ARG C:467 , ILE C:470 , LEU C:480 , ASN C:482 , ASN C:492 , PHE C:494 , PHE C:509 , GLY C:511 , GLN C:513 , CL C:603 , HOH C:712 , HOH C:715 , HOH C:719 , HOH C:732 , HOH C:740	binding site for residue FMN C 601
6	AC6	SOFTWARE	HOH B:121 , GLN D:14 , TRP D:18 , ALA C:405 , THR C:407 , ARG C:410	binding site for residue CL C 602
7	AC7	SOFTWARE	ASN C:425 , ASN C:449 , FMN C:601 , HOH C:732	binding site for residue CL C 603

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh...eeee........eeeehhhhhhhhh.hhhhhh..hhhhhh....hhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeeeeee.....eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dju A 402 GSLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKEL 546
                                   411       421       431       441       451       461       471       481       491       501       511       521       531       541

Chain B from PDB  Type:PROTEIN  Length:55
                                                                                       
               SCOP domains ------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------- Transcript
                 5dju B   3 NKFNKEVLVARQEIYWLPNLNWEQKFAFISSLTNDPSQSANLLAEAKKLNGAQPP  57
                                    12        22        32        42        52

Chain C from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh..eeeee........eeeehhhhhhhhh.hhhhh...hhhhhh....hhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeeeeee.....eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dju C 402 GSLATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKEL 546
                                   411       421       431       441       451       461       471       481       491       501       511       521       531       541

Chain D from PDB  Type:PROTEIN  Length:55
                                                                                       
               SCOP domains ------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------- Transcript
                 5dju D   3 NKFNKEVLVARQEIYWLPNLNWEQKFAFISSLTNDPSQSANLLAEAKKLNGAQPP  57
                                    12        22        32        42        52

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

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