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(-) Description

Title :  STRUCTURE OF HALIANGIUM OCHRACEUM BMC-T HO-5812
 
Authors :  M. Sutter, C. Aussignargues, A. Turmo, C. A. Kerfeld
Date :  01 Sep 15  (Deposition) - 03 Feb 16  (Release) - 11 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.44
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,C,E  (1x)
Biol. Unit 2:  B,D,F  (1x)
Keywords :  Bacterial Microcompartments, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Aussignargues, M. E. Pandelia, M. Sutter, J. S. Plegaria, J. Zarzycki, A. Turmo, J. Huang, D. C. Ducat, E. L. Hegg, B. R. Gibney, C. A. Kerfeld
Structure And Function Of A Bacterial Microcompartment Shel Protein Engineered To Bind A [4Fe-4S] Cluster.
J. Am. Chem. Soc. V. 138 5262 2016
PubMed-ID: 26704697  |  Reference-DOI: 10.1021/JACS.5B11734

(-) Compounds

Molecule 1 - MICROCOMPARTMENTS PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HOCH_5812
    Organism Scientific: HALIANGIUM OCHRACEUM (STRAIN DSM 14365 / JCM 11303 / SMP-2)
    Organism Taxid: 502025
    Strain: DSM 14365 / JCM 11303 / SMP-2

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A C E 
Biological Unit 2 (1x):  B D F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5DIH)

(-) Sites  (0, 0)

(no "Site" information available for 5DIH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DIH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DIH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DIH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DIH)

(-) Exons   (0, 0)

(no "Exon" information available for 5DIH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh...........eeeeeee.hhhhhhhhhhhhhhhh..eeeeeee.hhh.eeeeeeehhhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhh............eeeeeee.hhhhhhhhhhhhh.....eeeeeee.......eeeeeeehhhhhhhhhhhhhhhhh..eeeeeee............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dih A   3 HAPERFDATPPAGEPDRPALGVLELTSIARGITVADAALKRAPSLLLMSRPVSSGKHLLMMRGQVAEVEESMIAAREIAGAGSGALLDELELPYAHEQLWRFLDAPVVADAWEEESVIIVETATVCAAIDSADAALKTAPVVLRDMRLAIGIAGKAFFTLTGELADVEAAAEVVRERCGARLLELACIARPVDELRGRLFF 205
                                    12        22        32        42        52        62        72        82        92       102       112   ||  124       134       144       154       164       174       184       194       204 
                                                                                                                                           116|                                                                                      
                                                                                                                                            119                                                                                      


Chain B from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................eeeeeee.hhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeeehhhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhh...........eeeeeee.hhhhhhhhhhhhhhhh..eeeeeee.......eeeeeeehhhhhhhhhhhhhhhhh..eeeeeee...hhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dih B   1 MDHAPERFDATPPAGEPDRPALGVLELTSIARGITVADAALKRAPSLLLMSRPVSSGKHLLMMRGQVAEVEESMIAAREIAGAGSGALLDELELPYAHEQLWRFLDAPVVADAWEESVIIVETATVCAAIDSADAALKTAPVVLRDMRLAIGIAGKAFFTLTGELADVEAAAEVVRERCGARLLELACIARPVDELRGRLFF 205
                                    10        20        30        40        50        60        70        80        90       100       110    || 123       133       143       153       163       173       183       193       203  
                                                                                                                                            115|                                                                                      
                                                                                                                                             119                                                                                      


Chain C from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeee.hhhhhhhhhhhhhh....eeeeeeeehhheeeeeeeehhhhhhhhhhhhhhhhh.....eeeeeee......................eeeeeee.hhhhhhhhhhhhhh....eeeeeee.......eeeeeeehhhhhhhhhhhhhhhhh..eeeeeee............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dih C   7 RFDAEPDRPALGVLELTSIARGITVADAALKRAPSLLLMSRPVSSGKHLLMMRGQVAEVEESMIAAREIAGAGSGALLDELELPYAHEQLWRFLDAPVVADAWEESVIIVETATVCAAIDSADAALKTAPVVLRDMRLAIGIAGKAFFTLTGELADVEAAAEVVRERCGARLLELACIARPVDELRGRLFF 205
                               ||   21        31        41        51        61        71        81        91       101       111   ||  124       134       144       154       164       174       184       194       204 
                              10|                                                                                                115|                                                                                      
                               16                                                                                                 119                                                                                      


Chain D from PDB  Type:PROTEIN  Length:182
                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.hhhhhhhhhhhhhhhh..eeeeeee.....eeeeeeehhhhhhhhhhhhhhhh....eeeeeee....hhhhhhh..........eeeeeee.hhhhhhhhhhhhhhhh..eeeeeee.......eeeeeeehhhhhhhhhhhhhhhhh..eeeeeee............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dih D  18 DRPALGVLELTSIARGITVADAALKRAPSLLLMSRPVSSGKHLLMMRGQVAEVEESMIAAREIAGAGALLDELELPYAHEQLWRFLDAPVVADAWESVIIVETATVCAAIDSADAALKTAPVVLRDMRLAIGIAGKAFFTLTGELADVEAAAEVVRERCGARLLELACIARPVDELRGRLFF 205
                                    27        37        47        57        67        77     || 89        99       109    || 123       133       143       153       163       173       183       193       203  
                                                                                            83|                         114|                                                                                      
                                                                                             86                          119                                                                                      


Chain E from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeeeee.hhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeeehhhhhhhhhhhhhhhhh...eeeeeee......hhhhh..........eeeeeee.hhhhhhhhhhhhhh....eeeeeee.......eeeeeeehhhhhhhhhhhhhhhhh..eeeeeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5dih E   6 ERFDATPPEPDRPALGVLELTSIARGITVADAALKRAPSLLLMSRPVSSGKHLLMMRGQVAEVEESMIAAREIAGAGALLDELELPYAHEQLWRFLDAPVVADAWESVIIVETATVCAAIDSADAALKTAPVVLRDMRLAIGIAGKAFFTLTGELADVEAAAEVVRERCGARLLELACIARPVDELRGRLFF 205
                                   |17        27        37        47        57        67        77     || 89        99       109    || 123       133       143       153       163       173       183       193       203  
                                  13|                                                                 83|                         114|                                                                                      
                                   16                                                                  86                          119                                                                                      


Chain F from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............eeeeeee.hhhhhhhhhhhhhhhh..eeeeeeeehhheeeeeeeehhhhhhhhhhhhhhhhh...eeeeeee......hhhhh........eeeeeee.hhhhhhhhhhhhhhhh..eeeeeee.......eeeeeeehhhhhhhhhhhhhhhhh..eeeeeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5dih F   6 ERFDATPPAGEPDRPALGVLELTSIARGITVADAALKRAPSLLLMSRPVSSGKHLLMMRGQVAEVEESMIAAREIAGAGALLDELELPYAHEQLWRFLDAPVVADESVIIVETATVCAAIDSADAALKTAPVVLRDMRLAIGIAGKAFFTLTGELADVEAAAEVVRERCGARLLELACIARPVDELRGRLFF 205
                                    15        25        35        45        55        65        75       |87        97       107    || 123       133       143       153       163       173       183       193       203  
                                                                                                        83|                       112|                                                                                      
                                                                                                         86                        119
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DIH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DIH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DIH)

(-) Gene Ontology  (0, 0)

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 Related Entries

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        D0LHE3_HALO1 | D0LHE3: 5dii

(-) Related Entries Specified in the PDB File

5dii 5djb