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(-) Description

Title :  CRYSTAL STRUCTURE OF PAK1 IN COMPLEX WITH AN INHIBITOR COMPOUND FRAX1036
 
Authors :  J. Maksimoska, R. Marmorstein, W. Wang
Date :  27 Aug 15  (Deposition) - 27 Jan 16  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. O. Ndubaku, J. J. Crawford, J. Drobnick, I. Aliagas, D. Campbell, P. Dong, L. M. Dornan, S. Duron, J. Epler, L. Gazzard, C. E. Heise, K. P. Hoeflich, D. Jakubiak, H. La, W. Lee, B. Lin, J. P. Lyssikatos, J. Maksimoska, R. Marmorstein, L. J. Murray, T. O'Brien, A. Oh, S. Ramaswamy, W. Wang, X. Zhao, Y. Zhong, E. Blackwood, J. Rudolph
Design Of Selective Pak1 Inhibitor G-5555: Improving Properties By Employing An Unorthodox Low-Pk A Polar Moiety
Acs Med. Chem. Lett. V. 6 1241 2015
PubMed-ID: 26713112  |  Reference-DOI: 10.1021/ACSMEDCHEMLETT.5B00398

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE PAK 1
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: PROTEIN KINASE DOMAIN RESIDUE 249-545
    Gene: PAK1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ALPHA-PAK,P21-ACTIVATED KINASE 1,PAK-1,P65-PAK

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
159U1Ligand/Ion6-[2-CHLORO-4-(6-METHYLPYRAZIN-2-YL)PHENYL]-8-ETHYL-2-{[2-(1-METHYLPIPERIDIN-4-YL)ETHYL]AMINO}PYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE
2DMS1Ligand/IonDIMETHYL SULFOXIDE
3TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:284 , ARG A:299 , MET A:301 , GLU A:315 , ILE A:316 , MET A:319 , MET A:344 , GLU A:345 , TYR A:346 , LEU A:347 , ASP A:354 , LEU A:396 , THR A:406 , DMS A:602 , HOH A:725binding site for residue 59U A 601
2AC2SOFTWAREARG A:299 , GLU A:315 , ASP A:407 , 59U A:601binding site for residue DMS A 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DFP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DFP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DFP)

(-) Exons   (0, 0)

(no "Exon" information available for 5DFP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:293
                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh............eeeeee..eeeeeee......eeeeeeee.hhh.hhhhhhhhhhhhhhh.......eeeeeee..eeeeeee.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.............hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dfp A 249 SDEEILEKLRSIVSVGDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRStMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKIAKPLSSLTPLIAAAKEAT 541
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418    |  428       438       448       458       468       478       488       498       508       518       528       538   
                                                                                                                                                                                                        423-TPO
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DFP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DFP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DFP)

(-) Gene Ontology  (61, 61)

Asymmetric/Biological Unit(hide GO term definitions)

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  PAK1_HUMAN | Q13153
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAK1_HUMAN | Q13153: 1f3m 1yhv 1yhw 1zsg 2hy8 2qme 3dvp 3fxz 3fy0 3q4z 3q52 3q53 4daw 4eqc 4o0r 4o0t 4p90 4zji 4zjj 4zlo 4zy4 4zy5 4zy6 5dew 5dey 5ime 5kbq 5kbr

(-) Related Entries Specified in the PDB File

5dew 5dey