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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI COMMON PILUS CHAPERONE, ECPB
 
Authors :  J. A. Garnett, M. Diallo, S. J. Matthews
Date :  26 Aug 15  (Deposition) - 04 Nov 15  (Release) - 02 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Chaperone Usher, Pilus, Pili, Biofilm, Adhesion, Biogenesis, E. Coli, Virulence, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Pakharukova, J. A. Garnett, M. Tuittila, S. Paavilainen, M. Diallo Y. Xu, S. J. Matthews, A. V. Zavialov
Structural Insight Into Archaic And Alternative Chaperone-Usher Pathways Reveals A Novel Mechanism Of Pilus Biogenesis.
Plos Pathog. V. 11 05269 2015
PubMed-ID: 26587649  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1005269

(-) Compounds

Molecule 1 - PROBABLE FIMBRIAL CHAPERONE ECPB
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI CFT073
    Expression System Taxid: 199310
    Fragment: UNP RESIDUES 21-222
    Gene: ECPB, MATC, ECS88_0289
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5DFK)

(-) Sites  (0, 0)

(no "Site" information available for 5DFK)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:155 -A:164

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Thr A:59 -Pro A:60

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DFK)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee.....eeeeeeee.....eeeeeeeeee........ee.......eeee..eeee...eeeeeeeee........eeeeeeee....eeeeeeee........eeee..eeee.....eeeeeee...hhhhh..eeeeeee....eee...........eeeeee..eeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dfk A   0 MLDVGDISSFMNSDSSTLSKTIQNSTDSGRLINIRLERLSSPLDDGQVIAMDKPDELLLTPASLLLPAQASEVIRFFYKGPADEKERYYRIVWFDQAARIGTILVVAPRQANYHFQYANGSLTNTGNATLRILAYGPCLKAANGKECKENYYLMPGKSRRFTRVDTADNKGRVALWQGDKFIPVK 202
                                     9        19        29        39        49        59        69        79        89      |117       127       137       147       157       167       177       187       197     
                                                                                                                           96|                                                                                       
                                                                                                                           115
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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    Thr A:59 - Pro A:60   [ RasMol ]  
 

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  ECPB_ECOLI | P77188
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 Related Entries

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(-) Related Entries Specified in the PDB File

5d6h