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(-) Description

Title :  STRUCTURAL STUDIES OF AAV2 REP68 REVEAL A PARTIALLY STRUCTURED LINKER AND COMPACT DOMAIN CONFORMATION
 
Authors :  F. N. Musayev, F. Zarate-Perez
Date :  24 Aug 15  (Deposition) - 23 Sep 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Biol. Unit 9:  I  (1x)
Biol. Unit 10:  J  (1x)
Biol. Unit 11:  K  (1x)
Keywords :  Parvovirus, Adeno-Associated Virus, Dna Replication, Small-Angle X- Ray Scattering, Dna Binding Protein, Rep Proteins (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. N. Musayev, F. Zarate-Perez, M. Bardelli, C. Bishop, E. F. Saniev, R. M. Linden, E. Henckaerts, C. R. Escalante
Structural Studies Of Aav2 Rep68 Reveal A Partially Structured Linker And Compact Domain Conformation.
Biochemistry V. 54 5907 2015
PubMed-ID: 26314310  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B00610

(-) Compounds

Molecule 1 - PROTEIN REP68
    Chains: A, B, C, D, E, F, G, H, I, J, K
    EC Number: 3.6.4.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3) PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: ORIGIN BINDING DOMAIN (UNP RESIDUES 1-224)
    Gene: REP68
    Mutation: YES
    Organism Common: AAV-2
    Organism Scientific: ADENO-ASSOCIATED VIRUS 2
    Organism Taxid: 10804

 Structural Features

(-) Chains, Units

  1234567891011
Asymmetric Unit : ABCDEFGHIJK
Biological Unit 1 (1x): A          
Biological Unit 2 (1x):  B         
Biological Unit 3 (1x):   C        
Biological Unit 4 (1x):    D       
Biological Unit 5 (1x):     E      
Biological Unit 6 (1x):      F     
Biological Unit 7 (1x):       G    
Biological Unit 8 (1x):        H   
Biological Unit 9 (1x):         I  
Biological Unit 10 (1x):          J 
Biological Unit 11 (1x):           K

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 11)

Asymmetric Unit (1, 11)
No.NameCountTypeFull Name
1MG11Ligand/IonMAGNESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 7 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 8 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 9 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 10 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
Biological Unit 11 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:83 , HIS A:90 , HIS A:92binding site for residue MG A 301
02AC2SOFTWAREGLU B:83 , HIS B:90 , HIS B:92binding site for residue MG B 301
03AC3SOFTWAREGLU C:83 , HIS C:90 , HIS C:92binding site for residue MG C 301
04AC4SOFTWAREGLU D:83 , HIS D:90 , HIS D:92binding site for residue MG D 301
05AC5SOFTWAREGLU E:83 , HIS E:90 , HIS E:92 , HOH E:410binding site for residue MG E 301
06AC6SOFTWAREGLU F:83 , HIS F:90 , HIS F:92binding site for residue MG F 301
07AC7SOFTWAREGLU G:83 , HIS G:90 , HIS G:92binding site for residue MG G 301
08AC8SOFTWAREGLU H:83 , HIS H:90 , HIS H:92binding site for residue MG H 301
09AC9SOFTWAREGLU I:83 , HIS I:90 , HIS I:92binding site for residue MG I 301
10AD1SOFTWAREGLU J:83 , HIS J:90 , HIS J:92binding site for residue MG J 301
11AD2SOFTWAREGLU K:83 , HIS K:90 , HIS K:92binding site for residue MG K 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DCX)

(-) Cis Peptide Bonds  (11, 11)

Asymmetric Unit
No.Residues
1Gln A:162 -Pro A:163
2Gln B:162 -Pro B:163
3Gln C:162 -Pro C:163
4Gln D:162 -Pro D:163
5Gln E:162 -Pro E:163
6Gln F:162 -Pro F:163
7Gln G:162 -Pro G:163
8Gln H:162 -Pro H:163
9Gln I:162 -Pro I:163
10Gln J:162 -Pro J:163
11Gln K:162 -Pro K:163

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DCX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DCX)

(-) Exons   (0, 0)

(no "Exon" information available for 5DCX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee..hhhhhh...hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhhhh...........eee..........hhhhhhh.......eeeeee.hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dcx A   0 HMPGFYEIVIKVPSDLDGHLPGISDSFVNWVAEKEWELPPDSDMDLNLIEQAPLTVAEKLQRDFLTEWRRVSKAPEALFFVQFEKGESYFHMHVLVETTGVKSMVLGRFLSQIREKLIQRIYRGIEPTLPNWFAVTKTGNKVVDESYIPNYLLPKTQPELQWAWTNMEQYLSACLNLTERKRLVAQHLTHVSQTQEQNKENQNPNSDAP 214
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       145       155       165       175       185       195       205         
                                                                                                                                                                   137|                                                                      
                                                                                                                                                                    144                                                                      


Chain B from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee..hhhhhh...hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhhhh...........eee...........hhhhhhh.......eeeeee.hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dcx B   0 HMPGFYEIVIKVPSDLDGHLPGISDSFVNWVAEKEWELPPDSDMDLNLIEQAPLTVAEKLQRDFLTEWRRVSKAPEALFFVQFEKGESYFHMHVLVETTGVKSMVLGRFLSQIREKLIQRIYRGIEPTLPNWFAVTKTGGNKVVDESYIPNYLLPKTQPELQWAWTNMEQYLSACLNLTERKRLVAQHLTHVSQTQEQNKENQNP 209
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       144       154       164       174       184       194       204     
                                                                                                                                                                   137|                                                                  
                                                                                                                                                                    143                                                                  


Chain C from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..hhhhhh...hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhhhh...........eee.ee......ee.ee..hhhhhhh.......eeeeee.hhhhhh...hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dcx C   1 MPGFYEIVIKVPSDLDGHLPGISDSFVNWVAEKEWELPPDSDMDLNLIEQAPLTVAEKLQRDFLTEWRRVSKAPEALFFVQFEKGESYFHMHVLVETTGVKSMVLGRFLSQIREKLIQRIYRGIEPTLPNWFAVTKTRNGAGGGNKVVDESYIPNYLLPKTQPELQWAWTNMEQYLSACLNLTERKRLVAQHLTHVSQTQEQ 202
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200  


Chain D from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..hhhhhh...hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhhhh...........eee......ee..hhhhhhh.......eeeeee.hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dcx D   1 MPGFYEIVIKVPSDLDGHLPGISDSFVNWVAEKEWELPPDSDMDLNLIEQAPLTVAEKLQRDFLTEWRRVSKAPEALFFVQFEKGESYFHMHVLVETTGVKSMVLGRFLSQIREKLIQRIYRGIEPTLPNWFAVTKTGNKVVDESYIPNYLLPKTQPELQWAWTNMEQYLSACLNLTERKRLVAQHLTHVSQTQEQNKENQN 208
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |146       156       166       176       186       196       206  
                                                                                                                                                                  137|                                                                
                                                                                                                                                                   144                                                                


Chain E from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..hhhhhh...hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhhhh...........eee.......ee..hhhhhhh.......eeeeee.hhhhh....hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dcx E   1 MPGFYEIVIKVPSDLDGHLPGISDSFVNWVAEKEWELPPDSDMDLNLIEQAPLTVAEKLQRDFLTEWRRVSKAPEALFFVQFEKGESYFHMHVLVETTGVKSMVLGRFLSQIREKLIQRIYRGIEPTLPNWFAVTKTRGNKVVDESYIPNYLLPKTQPELQWAWTNMEQYLSACLNLTERKRLVAQHLTHVSQTQ 200
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       145       155       165       175       185       195     
                                                                                                                                                                   138|                                                        
                                                                                                                                                                    144                                                        


Chain F from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..hhhhhh...hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhhhhhh.........eee.......ee..hhhhhhh.......eeeeee.hhhhh....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dcx F   1 MPGFYEIVIKVPSDLDGHLPGISDSFVNWVAEKEWELPPDSDMDLNLIEQAPLTVAEKLQRDFLTEWRRVSKAPEALFFVQFEKGESYFHMHVLVETTGVKSMVLGRFLSQIREKLIQRIYRGIEPTLPNWFAVTKTGGNKVVDESYIPNYLLPKTQPELQWAWTNMEQYLSACLNLTERKRLVAQHL 193
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |145       155       165       175       185        
                                                                                                                                                                  137|                                                  
                                                                                                                                                                   143                                                  


Chain G from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..hhhhhh...hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhhh............eee.ee......ee.ee..hhhhhh........eeeeee.hhhhh....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dcx G   1 MPGFYEIVIKVPSDLDGHLPGISDSFVNWVAEKEWELPPDSDMDLNLIEQAPLTVAEKLQRDFLTEWRRVSKAPEALFFVQFEKGESYFHMHVLVETTGVKSMVLGRFLSQIREKLIQRIYRGIEPTLPNWFAVTKTRNGAGGGNKVVDESYIPNYLLPKTQPELQWAWTNMEQYLSACLNLTERKRLVAQHLTHVSQTQEQN 203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   


Chain H from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..hhhhhh...hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhhhh...........eee.......ee..hhhhhhh.......eeeeee.hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dcx H   1 MPGFYEIVIKVPSDLDGHLPGISDSFVNWVAEKEWELPPDSDMDLNLIEQAPLTVAEKLQRDFLTEWRRVSKAPEALFFVQFEKGESYFHMHVLVETTGVKSMVLGRFLSQIREKLIQRIYRGIEPTLPNWFAVTKTRGNKVVDESYIPNYLLPKTQPELQWAWTNMEQYLSACLNLTERKRLVAQHLTHVSQTQEQNKENQ 207
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       145       155       165       175       185       195       205  
                                                                                                                                                                   138|                                                               
                                                                                                                                                                    144                                                               


Chain I from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..hhhhhh...hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhhhh...........eee......ee..hhhhhhh.......eeeeee.hhhhh....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dcx I   1 MPGFYEIVIKVPSDLDGHLPGISDSFVNWVAEKEWELPPDSDMDLNLIEQAPLTVAEKLQRDFLTEWRRVSKAPEALFFVQFEKGESYFHMHVLVETTGVKSMVLGRFLSQIREKLIQRIYRGIEPTLPNWFAVTKTGNKVVDESYIPNYLLPKTQPELQWAWTNMEQYLSACLNLTERKRLVAQHLTH 195
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |146       156       166       176       186         
                                                                                                                                                                  137|                                                   
                                                                                                                                                                   144                                                   


Chain J from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhh...hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhhhh...........eee.........hhhhh...........eeeeee.hhhhh....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dcx J   3 GFYEIVIKVPSDLDGHLPGISDSFVNWVAEKEWELPPDSDMDLNLIEQAPLTVAEKLQRDFLTEWRRVSKAPEALFFVQFEKGESYFHMHVLVETTGVKSMVLGRFLSQIREKLIQRIYRGIEPTLPNWFAVTKTRGNKVVDESYIPNYLLPKTQPELQWAWTNMEQYLSACLNLTERKRLVAQH 192
                                    12        22        32        42        52        62        72        82        92       102       112       122       132     ||147       157       167       177       187     
                                                                                                                                                                 138|                                                
                                                                                                                                                                  144                                                


Chain K from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...........hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhhhhh..........eee......ee..hhhhhhh.......eeeeee..........hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dcx K   1 MPGFYEIVIKVPSDLDGHLPGISDSFVNWVAEKEWELPPDSDMDLNLIEQAPLTVAEKLQRDFLTEWRRVSKAPEALFFVQFEKGESYFHMHVLVETTGVKSMVLGRFLSQIREKLIQRIYRGIEPTLPNWFAVTKTGNKVVDESYIPNYLLPKTQPELQWAWTNMEQYLSACLNLTERKRLVAQHLTH 195
                                    10        20        30        40        50        60        70        80        90       100       110       120       130      |146       156       166       176       186         
                                                                                                                                                                  137|                                                   
                                                                                                                                                                   144
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DCX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DCX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DCX)

(-) Gene Ontology  (13, 13)

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  REP68_AAV2S | P03132
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        REP68_AAV2S | P03132: 1s9h 1u0j 4zo0 4zq9

(-) Related Entries Specified in the PDB File

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