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(-) Description

Title :  C-TERMINAL DOMAIN OF XERD RECOMBINASE IN COMPLEX WITH GAMMA DOMAIN OF FTSK
 
Authors :  A. N. Keller, Y. Xin, J. Lowe, I. Grainge
Date :  24 Aug 15  (Deposition) - 07 Sep 16  (Release) - 16 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Recombination (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. N. Keller, Y. Xin, S. Boer, J. Reinhardt, R. Baker, L. K. Arciszewska P. J. Lewis, D. J. Sherratt, J. Lowe, I. Grainge
Activation Of Xer-Recombination At Dif: Structural Basis Of The Ftsk Gamma-Xerd Interaction.
Sci Rep V. 6 33357 2016
PubMed-ID: 27708355  |  Reference-DOI: 10.1038/SREP33357

(-) Compounds

Molecule 1 - TYROSINE RECOMBINASE XERD,DNA TRANSLOCASE FTSK
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBAD
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 111-298 AND 1261-1329
    Gene: XERD, C3474, FTSK, B0890, JW0873
    Organism Taxid: 199310, 83333
    Strain: CFT073 / ATCC 700928 / UPEC, K12

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5DCF)

(-) Sites  (0, 0)

(no "Site" information available for 5DCF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DCF)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:2 -Asp A:3

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DCF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DCF)

(-) Exons   (0, 0)

(no "Exon" information available for 5DCF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:239
                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.ee....eeeee.hhh.eeeee.hhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh..hhhhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dcf A   2 KDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGLAPPPF 276
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181  ||   220       230       240       250       260  ||     
                                                                                                                                                                                                                184|                                              263|     
                                                                                                                                                                                                                 214                                               271
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DCF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DCF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DCF)

(-) Gene Ontology  (32, 47)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Lys A:2 - Asp A:3   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FTSK_ECOLI | P46889: 2ius 2j5p

(-) Related Entries Specified in the PDB File

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