5DBV - JenaLib

Title :   STRUCTURE OF A C269A MUTANT OF PROPIONALDEHYDE DEHYDROGENASE FROM THE CLOSTRIDIUM PHYTOFERMENTANS FUCOSE UTILISATION BACTERIAL MICROCOMPARTMENT

Authors :   L. R. Tuck, K. Altenbach, T. F. Ang, A. D. Crawshaw, D. J. Campopiano, D. J J. Marles-Wright

Date :   22 Aug 15 (Deposition) - 16 Mar 16 (Release) - 16 Mar 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.77

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Acylating Aldehyde Dehydrogenase, Coa, Propionaldehyde, Bmc, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. R. Tuck, K. Altenbach, T. F. Ang, A. D. Crawshaw, D. J. Campopiano, D. J. Clarke, J. Marles-Wright
Insight Into Coenzyme A Cofactor Binding And The Mechanism Of Acyl-Transfer In An Acylating Aldehyde Dehydrogenase Fro Clostridium Phytofermentans.
Sci Rep V. 6 22108 2016
PubMed-ID: 26899032 | Reference-DOI: 10.1038/SREP22108

Compounds

Molecule 1 - ALDEHYDE DEHYDROGENASE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 20-462
	Gene	:	CPHY_1178
	Mutation	:	YES
	Organism Scientific	:	CLOSTRIDIUM PHYTOFERMENTANS (STRAIN ATCC 700394 / DSM 18823 / ISDG)
	Organism Taxid	:	357809

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 8)

Asymmetric Unit (3, 8)

No.	Name	Count	Type	Full Name
1	ACT	4	Ligand/Ion	ACETATE ION
2	COA	1	Ligand/Ion	COENZYME A
3	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 32)

No.	Name	Count	Type	Full Name
1	ACT	16	Ligand/Ion	ACETATE ION
2	COA	4	Ligand/Ion	COENZYME A
3	SO4	12	Ligand/Ion	SULFATE ION

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:53 , MET A:54 , ASP A:55 , GLY A:115 , ASP A:116 , ARG A:117 , GLU A:426 , HOH A:714 , HOH A:784	binding site for residue SO4 A 501
2	AC2	SOFTWARE	ARG A:398 , HOH A:665 , HOH A:671 , HOH A:770 , HOH A:782 , HOH A:822	binding site for residue SO4 A 502
3	AC3	SOFTWARE	ILE A:133 , THR A:134 , ASN A:160 , PRO A:161 , HIS A:162 , GLY A:217 , VAL A:221 , LEU A:267 , ALA A:269 , ARG A:318 , GLU A:357 , MET A:359 , ACT A:506 , HOH A:635 , HOH A:674 , HOH A:757 , HOH A:787	binding site for residue COA A 503
4	AC4	SOFTWARE	HIS A:207 , GLN A:208 , HOH A:663	binding site for residue ACT A 504
5	AC5	SOFTWARE	PRO A:268 , ALA A:269 , ILE A:270 , ILE A:421 , PHE A:431 , ACT A:506	binding site for residue ACT A 505
6	AC6	SOFTWARE	ASN A:138 , ALA A:269 , PHE A:431 , COA A:503 , ACT A:505 , HOH A:635 , HOH A:678	binding site for residue ACT A 506
7	AC7	SOFTWARE	LYS A:101 , ARG A:117 , GLY A:422 , GLY A:424	binding site for residue ACT A 507
8	AC8	SOFTWARE	THR A:299 , LYS A:300 , HOH A:738	binding site for residue SO4 A 508

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:431
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhh..eeeee..eeeeeeeee..eeeee....hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhh......eeee...hhhhhhhhhhh....eeee..hhhhhhhhh....eeee......eeee....hhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhee..ee.......hhhhhhhhh......eeeee....hhhhhh.....eeeeeee.hhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhh..eeee..hhhhhhh..........ee.....ee.hhhh.eeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dbv A  29 LGVFDDMNQAIEAAKEAQLVVKKMSMDQREKIISAIRKKTIEHAETLARMAVEETGMGNVGHKILKHQLVAEKTPGTEDITTTAWSGDRGLTLVEMGPFGVIGAITPCTNPSETIICNTIGMLAGGNTVVFNPHPAAIKTSNFAVQLINEASLSAGGPVNIACSVRKPTLDSSKIMMSHQDIPLIAATGGPGVVTAVLQSGKRGIGAGAGNPPVLVDETADIRKAAEDIINGCTFDNNLPAIAEKEVVAIDAIANELMNYMVKEQGCYAITKEQQEKLTNLVITPKGLNRNCVGKDARTLLGMIGIDNIRCIIFEGEKEHPLISEELMMPILGIVRAKSFDDAVEKAVWLEHGNRHSAHIHSKNVDRITTYAKAIDTAILVKNAPSYAAIGFGGEGFCTFTIASRTGEGLTSASTFTKRRRCVMSDSLCIR 462
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328      |341       351       361       371       381       391       401       411       421       431       441       451       461 
                                                                                                                                                                                                                                                                                                                                            335|                                                                                                                           
                                                                                                                                                                                                                                                                                                                                             339

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

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