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(-) Description

Title :  RSK2 N-TERMINAL KINASE IN COMPLEX WITH BI-D1870
 
Authors :  B. A. Appleton
Date :  18 Aug 15  (Deposition) - 02 Sep 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Jain, M. Mathur, J. Lan, A. Costales, G. Atallah, S. Ramurthy, S. Subramanian, L. Setti, P. Feucht, B. Warne, L. Doyle, S. Basham, A. B. Jefferson, M. Lindvall, B. A. Appleton, C. M. Shafer
Discovery Of Potent And Selective Rsk Inhibitors As Biological Probes.
J. Med. Chem. V. 58 6766 2015
PubMed-ID: 26270416  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.5B00450
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RIBOSOMAL PROTEIN S6 KINASE ALPHA-3
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: N-TERMINAL KINASE (UNP RESIDUES 39-366)
    Gene: RPS6KA3, ISPK1, MAPKAPK1B, RSK2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: S6K-ALPHA-3,90 KDA RIBOSOMAL PROTEIN S6 KINASE 3,P90RSK3, INSULIN-STIMULATED PROTEIN KINASE 1,ISPK-1,MAP KINASE-ACTIVATED PROTEIN KINASE 1B,MAPKAPK-1B,RIBOSOMAL S6 KINASE 2,RSK-2,PP90RSK2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
15842Ligand/Ion(7R)-2-[(3,5-DIFLUORO-4-HYDROXYPHENYL)AMINO]-5,7-DIMETHYL-8-(3-METHYLBUTYL)-7,8-DIHYDROPTERIDIN-6(5H)-ONE
2GOL2Ligand/IonGLYCEROL
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
15841Ligand/Ion(7R)-2-[(3,5-DIFLUORO-4-HYDROXYPHENYL)AMINO]-5,7-DIMETHYL-8-(3-METHYLBUTYL)-7,8-DIHYDROPTERIDIN-6(5H)-ONE
2GOL1Ligand/IonGLYCEROL
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
15841Ligand/Ion(7R)-2-[(3,5-DIFLUORO-4-HYDROXYPHENYL)AMINO]-5,7-DIMETHYL-8-(3-METHYLBUTYL)-7,8-DIHYDROPTERIDIN-6(5H)-ONE
2GOL1Ligand/IonGLYCEROL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:75 , PHE A:79 , VAL A:82 , ALA A:98 , LYS A:100 , VAL A:131 , ASP A:148 , PHE A:149 , LEU A:150 , LEU A:200 , ASP A:211 , PHE A:212 , ASN A:333 , ARG A:337binding site for residue 584 A 401
2AC2SOFTWARELYS A:304 , ARG A:305 , ASN A:306 , ASN A:309binding site for residue GOL A 402
3AC3SOFTWAREGLY B:75 , PHE B:79 , VAL B:82 , ALA B:98 , LYS B:100 , VAL B:131 , ASP B:148 , PHE B:149 , LEU B:150 , LEU B:200 , ASP B:211 , PHE B:212 , ASN B:333 , ARG B:337binding site for residue 584 B 401
4AC4SOFTWARELYS B:304 , ARG B:305 , ASN B:309binding site for residue GOL B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D9K)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D9K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D9K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D9K)

(-) Exons   (0, 0)

(no "Exon" information available for 5D9K)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.eeeeeeeee....eeeeeee........eeeeeeee....hhhhhhhhhhhhhhhhhh.......eeeeee...eeeeee.....eehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..ee...hhh.eee.....eee....ee...hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh........hhhhhhhhhhhh.............hhhhhhhhhhhh..hhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d9k A  62 KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLYRREIHPPFKPATFYFDP 359
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211    || 233       243       253       263       273       283       293       303       313       323       333       343   ||  359
                                                                                                                                                                                    216|                                                                                                                   347|     
                                                                                                                                                                                     229                                                                                                                    354     


Chain B from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.eeeeeeeee....eeeeeee........eeeeeeee......hhhhhhhhhhhhhhhh.......eeeeee...eeeeee.....eehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.eee...hhh.eee.....eee....eee...hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh........hhhhhhhhhhhh.............hhhhhhhhhhhh..hhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d9k B  62 KADPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKECGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWNKLYRREIHPPFKPTFYFDP 359
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       211     ||232       242       252       262       272       282       292       302       312       322       332       342   ||  359
                                                                                                                                                                                     217|                                                                                                                  346|     
                                                                                                                                                                                      229                                                                                                                   354
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D9K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D9K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D9K)

(-) Gene Ontology  (31, 31)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KS6A3_HUMAN | P51812: 4d9t 4d9u 4jg6 4jg7 4jg8 4nus 4nw5 4nw6 5d9l

(-) Related Entries Specified in the PDB File

5d9l