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(-) Description

Title :  CRYSTAL STRUCTURE OF GLYOXALASE I FROM ZEA MAYS
 
Authors :  J. M. Gonzalez
Date :  14 Aug 15  (Deposition) - 09 Sep 15  (Release) - 28 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.73
Chains :  Asym./Biol. Unit :  A
Keywords :  Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. L. Turra, R. B. Agostini, C. M. Fauguel, D. A. Presello, C. S. Andreo, J. M. Gonzalez, V. A. Campos-Bermudez
Structure Of The Novel Monomeric Glyoxalase I From Zea Mays
Acta Crystallogr. , Sect. D V. 71 2009 2015
PubMed-ID: 26457425  |  Reference-DOI: 10.1107/S1399004715015205

(-) Compounds

Molecule 1 - LACTOYLGLUTATHIONE LYASE
    Chains: A
    EC Number: 4.4.1.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 26-315
    Gene: ZM.67052, ZEAMMB73_635823
    Organism Common: MAIZE
    Organism Scientific: ZEA MAYS
    Organism Taxid: 4577
    Synonym: GLYOXALASE I

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
12PE1Ligand/IonNONAETHYLENE GLYCOL
2FMT5Ligand/IonFORMIC ACID
3NA1Ligand/IonSODIUM ION
4NI1Ligand/IonNICKEL (II) ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:290 , HIS A:295binding site for residue NI A 301
2AC2SOFTWAREARG A:120 , VAL A:125 , 2PE A:308binding site for residue FMT A 302
3AC3SOFTWAREARG A:161 , THR A:210 , ASN A:212 , 2PE A:308 , HOH A:435binding site for residue FMT A 303
4AC4SOFTWAREARG A:182 , LYS A:184 , ILE A:193 , HOH A:439binding site for residue FMT A 304
5AC5SOFTWAREILE A:146 , ARG A:148binding site for residue FMT A 305
6AC6SOFTWARETYR A:105 , SER A:268 , LYS A:276 , HOH A:465binding site for residue FMT A 306
7AC7SOFTWARE2PE A:308 , HOH A:435binding site for residue NA A 307
8AC8SOFTWARETYR A:191 , FMT A:302 , FMT A:303 , NA A:307 , HOH A:413binding site for residue 2PE A 308

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D7Z)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:127 -Gly A:128
2Gly A:128 -Ser A:129

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D7Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D7Z)

(-) Exons   (0, 0)

(no "Exon" information available for 5D7Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:282
                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhh..eeeeeeee..hhhhhhhhhhhh...eeeeeeeehhh.eeeeeee........eeeeeee...........eeeeeeee.hhhhhhhhhhhh..eeeeeeee......eeeeee.....eeeeee.......eeeeeee..hhhhhhhhhhhhhh.eeeeeeeehhh.eeeeeee..hhhhh.eeeeeee...........eeeeeeee.hhhhhhhhhhhhhhhhh.ee....ee......eeeeee.....eeeeeehhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5d7z A  15 VDWHKHDSKRMLHAVYRVGDLDRTIKYYTECFGMKLLRKRDVPDEKYTNAFLGFGPENTNFAVELTYNYGVDKYDIGTGFGHFAIANDDVYKLAENIKSKGGKITREPGPVKGGSTVIAFAQDPDGYMFELIQRADTPEPLCQVMLRVGDLERSIKFYEKALGMKLLRKKDVPDYKYTIAMLGYADEDKTTVLELTYNYGVTEYSKGNAYAQVAIGTNDVYKSAEAVDLATKELGGKILRQPGPLPGINTKIASFVDPDGWKVVLVDNTDFLKELHLEHHHH 296
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D7Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D7Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D7Z)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:127 - Gly A:128   [ RasMol ]  
    Gly A:128 - Ser A:129   [ RasMol ]  
 

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