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(-) Description

Title :  CRYSTAL STRUCTURE OF FRAGMENT OF RIBOSOMAL PROTEIN P0 IN COMPLEX WITH 74NT 23S RNA FROM METHANOCOCCUS JANNASCHII
 
Authors :  A. G. Gabdulkhakov, I. V. Mitroshin, M. B. Garber
Date :  12 Aug 15  (Deposition) - 14 Sep 16  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym./Biol. Unit :  A,0
Keywords :  Archaeal Proteins, Methanococcus, Protein Structure, Rna, Ribosomal Proteins, Ribosomes, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. G. Gabdulkhakov, I. V. Mitroshin, M. B. Garber
Crystal Structure Of Fragment Of Ribosomal Protein P0 In Complex With 74Nt 23S Rna From Methanococcus Jannaschii
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 50S RIBOSOMAL PROTEIN L10
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-11C/MJAP0NTF
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PUBS520
    Expression System Vector Type: PLASMID
    Gene: RPL10, RPLP0, MJ0509
    Organism Scientific: METHANOCALDOCOCCUS JANNASCHII
    Organism Taxid: 2190
    Synonym: ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG,MJAL10
 
Molecule 2 - 23S RIBOSOMAL RNA
    Chains: 0
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMJA23S-74.UC18
    Expression System Strain: XL1(BLUE)
    Expression System Taxid: 562
    Expression System Vector: PUC19
    Expression System Vector Type: PLASMID
    Organism Scientific: METHANOCALDOCOCCUS JANNASCHII
    Organism Taxid: 2190

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : A0

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MG2Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREU 0:1191 , U 0:1192 , HOH 0:1402 , HOH 0:1403 , HOH 0:1404 , HOH 0:1405binding site for residue MG 0 1301
2AC2SOFTWAREA 0:1183 , G 0:1203 , U 0:1204 , C 0:1207binding site for residue MG 0 1302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D6G)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D6G)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 0 from PDB  Type:RNA  Length:74
                                                                                                           
                5d6g 0 1151 GCCUAAGACAGCGGGGAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAGAGUGCGUAACAGCUCACCCGUCGAGGC 1224
                                  1160      1170      1180      1190      1200      1210      1220    


Chain A from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhh....hhhhhhh.....eeeee..hhhhhhhhhhhh.eee........................hhhhhhhhh...eeee..eeee...................hhhhhh...eee..eeeee........hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5d6g A   10 APWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVTDMNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDE  214
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D6G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D6G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D6G)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RL10_METJA | P54049: 3jsy 5d8h 5dar

(-) Related Entries Specified in the PDB File

3jsy