Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  TRANSCRIPTION FACTOR-DNA COMPLEX
 
Authors :  J. Li, F. Niu, S. Ouyang, Z. Liu
Date :  06 Aug 15  (Deposition) - 10 Aug 16  (Release) - 30 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B,C,D,E,F,M,N
Biol. Unit 1:  A,B,C,D,E,F,M,N  (1x)
Biol. Unit 2:  A,C,M,N  (1x)
Biol. Unit 3:  B,D,E,F  (1x)
Keywords :  Regulation, Dna Binding, Innate Immune, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Li, J. P. Rodriguez, F. Niu, M. Pu, J. Wang, L. W. Hung, Q. Shao, Y. Zhu, W. Ding, Y. Liu, Y. Da, Z. Yao, J. Yang, Y. Zhao, G. H. Wei, G. Cheng, Z. J. Liu, S. Ouyang
Structural Basis For Dna Recognition By Stat6
Proc. Natl. Acad. Sci. Usa V. 113 13015 2016
PubMed-ID: 27803324  |  Reference-DOI: 10.1073/PNAS.1611228113

(-) Compounds

Molecule 1 - SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 6
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPMCSG7
    Expression System StrainBL21
    Expression System Taxid511693
    FragmentUNP RESIDUES 123-658
    GeneSTAT6
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymIL-4 STAT
 
Molecule 2 - DNA (5'- D(P*TP*CP*TP*GP*TP*CP*TP*TP*CP*CP*AP*GP*GP*AP*AP*AP*TP*CP*CP*AP*T)- 3')
    ChainsN, F
    EngineeredYES
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SyntheticYES
 
Molecule 3 - DNA (5'- D(P*AP*TP*GP*GP*AP*TP*TP*TP*CP*CP*TP*GP*GP*AP*AP*GP*AP*CP*AP*GP*A)- 3')
    ChainsM, E
    EngineeredYES
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SyntheticYES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFMN
Biological Unit 1 (1x)ABCDEFMN
Biological Unit 2 (1x)A C   MN
Biological Unit 3 (1x) B DEF  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1PTR4Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1PTR4Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1PTR2Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (0, 0)

(no "Site" information available for 5D39)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D39)

(-) Cis Peptide Bonds  (40, 40)

Asymmetric Unit
No.Residues
1Glu A:323 -Leu A:324
2Phe A:392 -Thr A:393
3Gly A:395 -Pro A:396
4Gly A:397 -Lys A:398
5Pro A:439 -Phe A:440
6Ile A:577 -Arg A:578
7Tyr A:616 -Pro A:617
8Asp A:637 -Gly A:638
9Gly A:638 -Arg A:639
10Leu B:249 -Glu B:250
11Glu B:323 -Leu B:324
12Phe B:392 -Thr B:393
13Gly B:395 -Pro B:396
14Gly B:397 -Lys B:398
15Pro B:439 -Phe B:440
16Tyr B:616 -Pro B:617
17Asp B:637 -Gly B:638
18Gly B:638 -Arg B:639
19Gly C:246 -Gly C:247
20Glu C:323 -Leu C:324
21Glu C:377 -Ser C:378
22Phe C:392 -Thr C:393
23Gly C:395 -Pro C:396
24Gly C:397 -Lys C:398
25Pro C:439 -Phe C:440
26Ile C:577 -Arg C:578
27Arg C:578 -Gly C:579
28Tyr C:616 -Pro C:617
29Gln C:633 -Met C:634
30Asp C:637 -Gly C:638
31Gly C:638 -Arg C:639
32Ala D:245 -Gly D:246
33Glu D:323 -Leu D:324
34Gly D:395 -Pro D:396
35Gly D:397 -Lys D:398
36Pro D:439 -Phe D:440
37Ile D:577 -Arg D:578
38Tyr D:616 -Pro D:617
39Asp D:637 -Gly D:638
40Gly D:638 -Arg D:639

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D39)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D39)

(-) Exons   (0, 0)

(no "Exon" information available for 5D39)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:489
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.eeeee....eee......eeeee.hhhhhh........eeeeehhhhhh......ee......eee....eeeeee...ee............hhhhh.eeeeeeeee........eeeeee....eee.hhhhhhhhhhhhhhhhhhh...........eeehhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh............eeehhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh....eeeeee.......eeeeeee.......eeeee...hhhhhhhhhhhhhhhhh....ee...eehhhhhhhhh...........ee..eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d39 A 125 QEELKFKTGLRRLQHRVGEIHLLREALALAMLLQETTGELEAAKALVLKRIQIWKRQQQLAGNGAPFEESLAPLQERCESLVDIYSQLQQEVGAAGGELEPKTRASLTGRLDEVLRTLVTSCFLVEKQPPQVLKTQTKFQAGVRFLLGLRFLPAKPPLVRADMVTEKQARELESTGEIINNTVPLENSIPGNCCSALFKNLLLKKIKRCERKGTESVTEEKCAVLFSASFTLGPGKLPIQLQALSLPLVVIVHGNQDNNAKATILWDNAFSEMDRVPFVVAERVPWEKMCETLNLKFMAEVGTNRGLLPEHFLFLAQKIFNDNSLSMEAFQHRSVSWSQFNKEILLGRGFTFWQWFDGVLDLTKRCLRSYWSDRLIIGFISKQYVTSLLLNEPDGTFLLRFSDSEIGGITIAHVIRGQDGSPQIENIQPFSAKDLSIRSLGDRIRDLAQLKNLYPKKPKDEAFRSHYKPEQMGKDGRGyVPATIKMTVE 651
                                   134       144      |180       190       200       210       220       230       240       250       260       270       280       290       300 ||    312       322 ||    342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642         
                                                    151|                                                                                                                         302|                324|                                                                                                                                                                                                                                                                                                               641-PTR      
                                                     178                                                                                                                          305                 335                                                                                                                                                                                                                                                                                                                            

Chain B from PDB  Type:PROTEIN  Length:484
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.eeeee....eee...eeeeeeee.............eeeeeehhhhh.......ee......eee....eeeeeeeeeee..........hhhhh.eeeeeeeee........eeeeee....eee.hhhhhhhhhhhhhhhhhhh...........eeehhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh............eeehhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh....eeeeee.......eeeeeee.......eeeee...hhhhhhhhhhhhhhhhh....ee....hhhhhhhhhh...............eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d39 B 125 QEELKFKTGLRRLQHRVGEIHLLREALAMLLQETTGELEAAKALVLKRIQIWKRQQQLAGNGAPFEESLAPLQERCESLVDIYSQLQQEVGAAGGELEPKTRASLTGRLDEVLRTLVTSCFLVEKQPPQVLKTQTKFQAGVRFLLGLRFPAKPPLVRADMVTEKQARELESTGEIINNTVPLENSIPGNCCSALFKNLLLKKIKRCEGTESVTEEKCAVLFSASFTLGPGKLPIQLQALSLPLVVIVHGNQDNNAKATILWDNAFSEMDRVPFVVAERVPWEKMCETLNLKFMAEVGTNRGLLPEHFLFLAQKIFNDNSLSMEAFQHRSVSWSQFNKEILLGRGFTFWQWFDGVLDLTKRCLRSYWSDRLIIGFISKQYVTSLLLNEPDGTFLLRFSDSEIGGITIAHVIRGQDGSPQIENIQPFSAKDLSIRSLGDRIRDLAQLKNLYPKKPKDEAFRSHYKPEQMGKDGRGyVPATIKMTVE 651
                                   134       144      |182       192       202       212       222       232       242       252       262       272       282       292       305       315       335       345       355       365      |377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637   |   647    
                                                    151|                                                                                                                      301|                324|                                  372|                                                                                                                                                                                                                                                                       641-PTR      
                                                     180                                                                                                                       305                 335                                   375                                                                                                                                                                                                                                                                                    

Chain C from PDB  Type:PROTEIN  Length:484
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhheeeee....eee...eeeeeeee.hhhhh.....eeeeeeeehhhhhh......ee..eee.eee....eeeeeeeeeee.........hhhh.eeeeeeeeee........eeeeee...eeee.hhhhhhhhhhhhhhhhhhh...........eeehhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh............eeehhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh....eeeeee.......eeeeee.......eeee...hhhhhhhhhhhhhhhhh....ee...eehhhhhhhhh...........ee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d39 C 125 QEELKFKTGLRRLQHRVGEIHLLREALEALAMLLQETTGELEAAKALVLKRIQIWKRQQQLAGNGAPFEESLAPLQERCESLVDIYSQLQQEVGAAGGELEPKTRASLTGRLDEVLRTLVTSCFLVEKQPPQVLKTQTKFQAGVRFLLGLRFPAKPPLVRADMVTEKQARELESTGEIINNTVPLENSIPGNCCSALFKNLLLKKIKRCETESVTEEKCAVLFSASFTLGPGKLPIQLQALSLPLVVIVHGNQDNNAKATILWDNAFSEMDRVPFVVAERVPWEKMCETLNLKFMAEVGTNRGLLPEHFLFLAQKIFNDNSLSMEAFQHRSVSWSQFNKEILLGRGFTFWQWFDGVLDLTKRCLRSYWSDRLIIGFISKQYVTSLLLNEPDGTFLLRFSDSEIGGITIAHVIRGGSPQIENIQPFSAKDLSIRSLGDRIRDLAQLKNLYPKKPKDEAFRSHYKPEQMGKDGRGyVPATIKMTVE 651
                                   134       144      |179       189       199       209       219       229       239       249       259       269       279       289       299 ||    312       322 ||    342       352       362       372|      385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575   ||  587       597       607       617       627       637   |   647    
                                                    151|                                                                                                                         301|                324|                                  372|                                                                                                                                                                                                        579|                                                        641-PTR      
                                                     177                                                                                                                          305                 335                                   376                                                                                                                                                                                                         582                                                                     

Chain D from PDB  Type:PROTEIN  Length:487
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhheeeee....eee...eeeeeeee.hhhhh.....eeeeeeeehhhhhh......ee..eee.eee....eeeeeeeeeee..............eeeeeeeeee........eeeeee...eeee.hhhhhhhhhhhhhhhhhhh...........eeehhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh............eeehhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh....eeeeee.......eeeeeee.......eeee....hhhhhhhhhhhhhhhhh....ee...eehhhhhhhhh...........ee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d39 D 125 QEELKFKTGLRRLQHRVGEIHLLREALQEALAMLLQETTGELEAAKALVLKRIQIWKRQQQLAGNGAPFEESLAPLQERCESLVDIYSQLQQEVGAAGGELEPKTRASLTGRLDEVLRTLVTSCFLVEKQPPQVLKTQTKFQAGVRFLLGLRFPAKPPLVRADMVTEKQARELESTGEIINNTVPLENSIPGNCCSALFKNLLLKKIKRCETESVTEEKCAVLFSASFTLGPGKLPIQLQALSLPLVVIVHGNQDNNAKATILWDNAFSEMDRVPFVVAERVPWEKMCETLNLKFMAEVGTNRGLLPEHFLFLAQKIFNDNSLSMEAFQHRSVSWSQFNKEILLGRGFTFWQWFDGVLDLTKRCLRSYWSDRLIIGFISKQYVTSLLLNEPDGTFLLRFSDSEIGGITIAHVIRGQDGSPQIENIQPFSAKDLSIRSLGDRIRDLAQLKNLYPKKPKDEAFRSHYKPEQMGKDGRGyVPATIKMTVE 651
                                   134       144       178       188       198       208       218       228       238       248       258       268       278       288       298  ||   311       321  ||   341       351       361       371||     384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634      |644       
                                                     152|                                                                                                                         301|                324|                                  372|                                                                                                                                                                                                                                                                      641-PTR      
                                                      177                                                                                                                          305                 335                                   376                                                                                                                                                                                                                                                                                   

Chain E from PDB  Type:DNA  Length:21
                                                     
                 5d39 E   1 ATGGATTTCCTGGAAGACAGA  21
                                    10        20 

Chain F from PDB  Type:DNA  Length:21
                                                     
                 5d39 F   1 TCTGTCTTCCAGGAAATCCAT  21
                                    10        20 

Chain M from PDB  Type:DNA  Length:21
                                                     
                 5d39 M   1 ATGGATTTCCTGGAAGACAGA  21
                                    10        20 

Chain N from PDB  Type:DNA  Length:21
                                                     
                 5d39 N   1 TCTGTCTTCCAGGAAATCCAT  21
                                    10        20 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D39)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D39)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D39)

(-) Gene Ontology  (32, 32)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    PTR  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
(no "Sites" information available for 5d39)
 
  Cis Peptide Bonds
    Ala D:245 - Gly D:246   [ RasMol ]  
    Arg C:578 - Gly C:579   [ RasMol ]  
    Asp A:637 - Gly A:638   [ RasMol ]  
    Asp B:637 - Gly B:638   [ RasMol ]  
    Asp C:637 - Gly C:638   [ RasMol ]  
    Asp D:637 - Gly D:638   [ RasMol ]  
    Gln C:633 - Met C:634   [ RasMol ]  
    Glu A:323 - Leu A:324   [ RasMol ]  
    Glu B:323 - Leu B:324   [ RasMol ]  
    Glu C:323 - Leu C:324   [ RasMol ]  
    Glu C:377 - Ser C:378   [ RasMol ]  
    Glu D:323 - Leu D:324   [ RasMol ]  
    Gly A:395 - Pro A:396   [ RasMol ]  
    Gly A:397 - Lys A:398   [ RasMol ]  
    Gly A:638 - Arg A:639   [ RasMol ]  
    Gly B:395 - Pro B:396   [ RasMol ]  
    Gly B:397 - Lys B:398   [ RasMol ]  
    Gly B:638 - Arg B:639   [ RasMol ]  
    Gly C:246 - Gly C:247   [ RasMol ]  
    Gly C:395 - Pro C:396   [ RasMol ]  
    Gly C:397 - Lys C:398   [ RasMol ]  
    Gly C:638 - Arg C:639   [ RasMol ]  
    Gly D:395 - Pro D:396   [ RasMol ]  
    Gly D:397 - Lys D:398   [ RasMol ]  
    Gly D:638 - Arg D:639   [ RasMol ]  
    Ile A:577 - Arg A:578   [ RasMol ]  
    Ile C:577 - Arg C:578   [ RasMol ]  
    Ile D:577 - Arg D:578   [ RasMol ]  
    Leu B:249 - Glu B:250   [ RasMol ]  
    Phe A:392 - Thr A:393   [ RasMol ]  
    Phe B:392 - Thr B:393   [ RasMol ]  
    Phe C:392 - Thr C:393   [ RasMol ]  
    Pro A:439 - Phe A:440   [ RasMol ]  
    Pro B:439 - Phe B:440   [ RasMol ]  
    Pro C:439 - Phe C:440   [ RasMol ]  
    Pro D:439 - Phe D:440   [ RasMol ]  
    Tyr A:616 - Pro A:617   [ RasMol ]  
    Tyr B:616 - Pro B:617   [ RasMol ]  
    Tyr C:616 - Pro C:617   [ RasMol ]  
    Tyr D:616 - Pro D:617   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5d39
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  STAT6_HUMAN | P42226
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  STAT6_HUMAN | P42226
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STAT6_HUMAN | P422261oj5 4y5u 4y5w

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5D39)