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(-) Description

Title :  1.75 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE APO-FORM ACYL-CARRIER-PROTEIN SYNTHASE (ACPS) (ACPS; PURIFICATION TAG OFF) FROM STAPHYLOCOCCUS AUREUS SUBSP. AUREUS COL IN THE I4 SPACE GROUP
 
Authors :  A. S. Halavaty, G. Minasov, L. Papazisi, W. F. Anderson, Center For St Genomics Of Infectious Diseases (Csgid)
Date :  28 Jul 15  (Deposition) - 05 Aug 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Acyl-Carrier-Protein Synthase, Acps, Fas Ii, Structural Genomics, Csgid, Center For Structural Genomics Of Infectious Diseases, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Halavaty, G. Minasov, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 75 Angstrom Resolution Crystal Structure Of The Apo-Form Acyl-Carrier-Protein Synthase (Acps) (Acps; Purification Ta Off) From Staphylococcus Aureus Subsp. Aureus Col In The I4 Space Group
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HOLO-[ACYL-CARRIER-PROTEIN] SYNTHASE
    Chains: A, B, C
    EC Number: 2.7.8.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG19
    Expression System Strain: BL21(DE3)-MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ACPS, SACOL2061
    Organism Scientific: STAPHYLOCOCCUS AUREUS (STRAIN COL)
    Organism Taxid: 93062
    Strain: COL
    Synonym: HOLO-ACP SYNTHASE,4'-PHOSPHOPANTETHEINYL TRANSFERASE ACPS

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric/Biological Unit (3, 14)
No.NameCountTypeFull Name
1CL12Ligand/IonCHLORIDE ION
2NI1Ligand/IonNICKEL (II) ION
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:42 , HIS A:43binding site for residue CL A 201
02AC2SOFTWAREPRO A:88 , SER A:100 , ILE A:101 , LYS B:63 , HOH B:384binding site for residue CL A 202
03AC3SOFTWAREASN A:33 , LYS A:37 , LYS B:37 , ASN B:82binding site for residue CL A 203
04AC4SOFTWAREGLU A:11 , ARG A:14 , HOH C:366binding site for residue CL A 204
05AC5SOFTWARESER A:102 , HIS A:103 , HOH B:301binding site for residue CL A 205
06AC6SOFTWARETHR B:42 , HIS B:43 , HOH B:409binding site for residue CL B 201
07AC7SOFTWAREGLU B:11 , ARG B:14 , HOH B:365binding site for residue CL B 202
08AC8SOFTWARELYS B:37 , ARG B:46 , HOH B:346 , HOH B:411binding site for residue CL B 203
09AC9SOFTWAREGLN B:22 , PRO B:23 , LYS B:24binding site for residue CL B 204
10AD1SOFTWAREHIS C:3 , HIS C:43 , PHE C:95 , CL C:204 , HOH C:367 , HOH C:388binding site for residue NI C 201
11AD2SOFTWAREHOH B:398 , GLU C:11 , ARG C:14binding site for residue CL C 202
12AD3SOFTWAREGLN C:22 , LYS C:24binding site for residue CL C 203
13AD4SOFTWAREPHE C:41 , THR C:42 , HIS C:43 , NI C:201binding site for residue CL C 204
14AD5SOFTWARELYS C:37 , ASN C:82 , ASP C:83 , GLU C:84 , LEU C:85 , GLY C:86 , GLU C:93 , GLY C:94 , PHE C:95 , HOH C:312 , HOH C:337 , HOH C:347 , HOH C:373binding site for residue PEG C 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CXD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CXD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CXD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CXD)

(-) Exons   (0, 0)

(no "Exon" information available for 5CXD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:119
                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeehhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....hhhhh..ee.....ee.....eeeeeeeee...eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 5cxd A  -2 SNAMIHGIGVDLIEIDRIQALYSKQPKLVERILTKNEQHKFNNFTHEQRKIEFLAGRFATKEAFSKALGTGHVAFNDIDCYNDELGKPKIDYEGFIVHVSISHTEHYAMSQVVLEKSAF 119
                                     7        17        27        37        47        57        67||      80        90       100       110         
                                                                                                 68|                                               
                                                                                                  72                                               


Chain B from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeehhhhhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..ee.....ee......eeeeeeee...eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cxd B  -2 SNAMIHGIGVDLIEIDRIQALYSKQPKLVERILTKNEQHKFNNFTHEQRKIEFLAGRFATKEAFSKALGTGLGKHVAFNDIDCYNDELGKPKIDYEGFIVHVSISHTEHYAMSQVVLEKSAF 119
                                     7        17        27        37        47        57        67        77        87        97       107       117  


Chain C from PDB  Type:PROTEIN  Length:121
                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeehhhhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh..ee.....ee.....eeeeeeeee...eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cxd C  -1 NAMIHGIGVDLIEIDRIQALYSKQPKLVERILTKNEQHKFNNFTHEQRKIEFLAGRFATKEAFSKALGTGLGKHVAFNDIDCYNDELGKPKIDYEGFIVHVSISHTEHYAMSQVVLEKSAF 119
                                     8        18        28        38        48        58        68        78        88        98       108       118
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CXD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CXD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CXD)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  5cxd
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        ACPS_STAAC | Q5HED0: 4dxe 4jm7

(-) Related Entries Specified in the PDB File

4dxe 2.52 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE ACYL-CARRIER- PROTEIN SYNTHASE (ACPS)-ACYL CARRIER PROTEIN (ACP) PROTEIN-PROTEIN COMPLEX FROM STAPHYLOCOCCUS AUREUS SUBSP. AUREUS COL RELATED ID: CSGID-IDP00816 RELATED DB: TARGETTRACK
4jm7 1.82 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF HOLO-(ACYL-CARRIER- PROTEIN) SYNTHASE (ACPS) FROM STAPHYLOCOCCUS AUREUS