5COL - JenaLib

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Title :   RIBOSOMAL PROTEIN L11 FROM METHANOCOCCUS JANNASCHII

Authors :   A. G. Gabdulkhakov, I. V. Mitroshin, M. B. Garber

Date :   20 Jul 15 (Deposition) - 17 Aug 16 (Release) - 17 Aug 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.25

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Archaeal Proteins, Methanococcus, Protein Structure, Rna, Ribosomal Proteins, Ribosomes, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. G. Gabdulkhakov
Crystal Structure Of Ribosomal Protein L11 From Methanococcus Jannaschii
To Be Published
PubMed: search

Molecule 1 - 50S RIBOSOMAL PROTEIN L11
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-11C/MJAL11
	Expression System Taxid	:	469008
	Expression System Variant	:	PUBS520
	Expression System Vector Type	:	PET-11C
	Gene	:	RPL11, MJ0373
	Organism Scientific	:	METHANOCALDOCOCCUS JANNASCHII
	Organism Taxid	:	2190

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 4)

No.	Name	Count	Type	Full Name
1	CIT	1	Ligand/Ion	CITRIC ACID
2	CL	1	Ligand/Ion	CHLORIDE ION
3	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CIT	-1	Ligand/Ion	CITRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 2 (3, 3)

No.	Name	Count	Type	Full Name
1	CIT	1	Ligand/Ion	CITRIC ACID
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:114	binding site for residue CL A 201
2	AC2	SOFTWARE	GLU B:6 , PRO B:51 , VAL B:67 , GLY B:68	binding site for residue PGE B 201
3	AC3	SOFTWARE	TYR B:153 , TYR B:156	binding site for residue PEG B 202
4	AC4	SOFTWARE	LYS B:2 , VAL B:4 , GLU B:6 , LYS B:53 , ILE B:55	binding site for residue CIT B 203

(no "SS Bond" information available for 5COL)

Asymmetric Unit

No.	Residues
1	Pro A:18	-	Pro A:19
2	Pro B:18	-	Pro B:19

(no "SAP(SNP)/Variant" information available for 5COL)

(no "PROSITE Motif" information available for 5COL)

(no "Exon" information available for 5COL)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee........hhhhhhh....hhhhhhhhhhhhhhhhh..eeeeeeeee.....eeeee...hhhhhhhhhhh.....eeehhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.eee...hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5col A   1 AKEVVEVLVTGGRATAGPPLGPAIGPLGVNVMQVVKEINEKTKDYEGMQVPVKVIVDTETRKFEIEVGIPPTTALIKKELGIHEVVGNLTLEQVIKIAKMKKDAMLSYTLKNAVKEVLGTCGSMGVTVEGKDPKEVQKEIDAGVYDEY 156
                                    10        20        30        40        50        60        70        80 ||     98       108       118       128       138       148        
                                                                                                            82|                                                                 
                                                                                                             91

Chain B from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee........hhhhhhhhhh.hhhhhhhhhhhhhhhhh..eeeeeeeee.....eeeee...hhhhhhhhhh...............eehhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..ee...hhhhhhhhhhh..hhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5col B   1 AKEVVEVLVTGGRATAGPPLGPAIGPLGVNVMQVVKEINEKTKDYEGMQVPVKVIVDTETRKFEIEVGIPPTTALIKKELGIETAAHEPRHEVVGNLTLEQVIKIAKMKKDAMLSYTLKNAVKEVLGTCGSMGVTVEGKDPKEVQKEIDAGVYDEYFKE 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5COL)

(no "CATH Domain" information available for 5COL)

(no "Pfam Domain" information available for 5COL)

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Asymmetric Unit
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	Ligands, Modified Residues, Ions
		CIT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PEG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PGE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
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		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Pro A:18 - Pro A:19	[ RasMol ]
		Pro B:18 - Pro B:19	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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(no "Related Entries Specified in the PDB File" available for 5COL)

Description

Compounds

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Ligands, Modified Residues, Ions (4, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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