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(-) Description

Title :  GKAP MUTANT B12
 
Authors :  L. -Q. Chen
Date :  10 Jul 15  (Deposition) - 09 Sep 15  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Insert Mutation, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. -Q. Chen
Active Site Loop Architecture Enhance The Promiscuous Pte Activity In Lactonase From Geobacillus Kaustophilus Hta426
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PHOSPHOTRIESTERASE
    Chains: A, B
    EC Number: 3.5.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GK1506
    Mutation: YES
    Organism Scientific: GEOBACILLUS KAUSTOPHILUS HTA426
    Organism Taxid: 235909
    Strain: HTA426
    Synonym: PHOSPHO-TRIESTERASE-LIKE LACTONASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1CO4Ligand/IonCOBALT (II) ION
2KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:23 , HIS A:25 , KCX A:145 , ASP A:270 , CO A:402 , HOH A:502binding site for residue CO A 401
2AC2SOFTWAREKCX A:145 , HIS A:178 , HIS A:206 , CO A:401binding site for residue CO A 402
3AC3SOFTWAREKCX B:145 , HIS B:178 , HIS B:206 , CO B:402 , HOH B:501binding site for residue CO B 401
4AC4SOFTWAREHIS B:23 , HIS B:25 , KCX B:145 , ASP B:270 , CO B:401 , HOH B:501binding site for residue CO B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CH9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CH9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CH9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CH9)

(-) Exons   (0, 0)

(no "Exon" information available for 5CH9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee.hhh.eee...eeee...hhhhhh.....hhhhhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhh.eeeeee.........hhhhhhhhhh.hhhhhhhhhhhhhhhh..........eeeee......hhhhhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhh...eeee................hhhhhhhhhhhhhhh.hhh.eee....eeee.......hhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ch9 A   3 EMVETVCGPVPVEQLGKTLIHEHFLFGYPGFQGDVTRGTFREDESLRVAVEAAEKMKRHGIQTVVDPTPNDCGRNPAFLRRVAEETGLNIICATGYYYEGEGAPPYFQFRRLLGTAEDDIYDMFMAELTEGIADTGIKAGVIkLASSKGRITEYEKMFFRAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGADPKKIVIGHMCGNTDPDYHRKTLAYGVYIAFDRFGIQDRGMVGMIAPTDEERVRTLLALLRDGYEKQIMLSHDTVNVWLGRPFTLPEPFAEMMKNWHVEHLFVNIIPALKNEGIRDEVLEQMFIGNPAALFSA 330
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142  |    152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322        
                                                                                                                                                                        145-KCX                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee.hhh..ee...eeee...hhhhhh.....hhhhhhhhhhhhhhhhhh....eeee........hhhhhhhhhhhhh.eeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee......hhhhhhhhhhhhhhhhhhh.eeeee.....hhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhh...eeee................hhhhhhhhhhhhhhh.hhh.eee....eeee.......hhhhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ch9 B   3 EMVETVCGPVPVEQLGKTLIHEHFLFGYPGFQGDVTRGTFREDESLRVAVEAAEKMKRHGIQTVVDPTPNDCGRNPAFLRRVAEETGLNIICATGYYYEGEGAPPYFQFRRLLGTAEDDIYDMFMAELTEGIADTGIKAGVIkLASSKGRITEYEKMFFRAAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGADPKKIVIGHMCGNTDPDYHRKTLAYGVYIAFDRFGIQDRGMVGMIAPTDEERVRTLLALLRDGYEKQIMLSHDTVNVWLGRPFTLPEPFAEMMKNWHVEHLFVNIIPALKNEGIRDEVLEQMFIGNPAALFSA 330
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142  |    152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322        
                                                                                                                                                                        145-KCX
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CH9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CH9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CH9)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5KZU5_GEOKA | Q5KZU5: 3ojg 3orw 3tn3 3tn4 3tn5 3tn6 3tnb 4h9t 4h9u 4h9v 4h9x 4h9y 4h9z 4ha0 4wvx

(-) Related Entries Specified in the PDB File

3tn3 3TN3 IS THE WILD TYPE ENZYME