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(-) Description

Title :  STRUCTURE OF THE DEHYDRATASE DOMAIN OF PPSC FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH C12:1-COA
 
Authors :  S. Gavalda, A. Faille, L. Mourey, J. D. Pedelacq
Date :  28 Mar 17  (Deposition) - 31 May 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Dehydratase, Polyketide, Complex, Tuberculosis, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Faille, S. Gavalda, N. Slama, C. Lherbet, L. Maveyraud, V. Guillet, F. Laval, A. Quemard, L. Mourey, J. D. Pedelacq
Insights Into Substrate Modification By Dehydratases From Type I Polyketide Synthases.
J. Mol. Biol. V. 429 1554 2017
PubMed-ID: 28377293  |  Reference-DOI: 10.1016/J.JMB.2017.03.026

(-) Compounds

Molecule 1 - PHTHIOCEROL/PHENOLPHTHIOCEROL SYNTHESIS POLYKETIDE SYNTHASE TYPE I PPSC
    Chains: A
    EC Number: 2.3.1.41
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PPSC, RV2933
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Synonym: BETA-KETOACYL-ACYL-CARRIER-PROTEIN SYNTHASE I

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
18Z21Ligand/Ion~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-4-OXIDANYL-3-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXY-3,3-DIMETHYL-2-OXIDANYL-BUTANOYL]AMINO]PROPANOYLAMINO]ETHYL] (~{E})-DODEC-2-ENETHIOATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:959 , ILE A:961 , LEU A:967 , GLY A:969 , LEU A:999 , ARG A:1000 , MET A:1002 , LEU A:1052 , GLN A:1084 , VAL A:1094 , GLN A:1107 , VAL A:1108 , ARG A:1109 , ASP A:1129 , GLY A:1136 , VAL A:1161 , PRO A:1163 , VAL A:1164 , VAL A:1179 , ARG A:1191 , ALA A:1201 , HOH A:1620 , HOH A:1633 , HOH A:1710 , HOH A:1731binding site for residue 8Z2 A 1301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5NJI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5NJI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5NJI)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5NJI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:266
                                                                                                                                                                                                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee......eeeeeee.....hhh.eee..ee..hhhhhhhhhhhhhhhhh.......eeeeeeee.........eeeeeeeee...eeeeeeee....eeeeeeeeee.........eeeehhhhhhhhhhhh.eee.hhhh.eeeeeee....eeeee..hhhhh........hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee..hhhhh.eeeeeeeee..eeeeeeeee.....eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5nji A  926 DTHPLLGVGVTDPTNGTRVWESELDPDLLWLADFVIDDLVVLPGAAYAEIALAAATDTFAVEQDQPWMISELDLRQMLHVTPGTVLVTTLTGDEQRCQVEIRTRSGWTTHATATVARAEPLAPLDLEDQLDPDDLYQRLRGAGQQHGPAFQGIVGLAVTQAGVARAQVRLPASARTGSREFMLHPVMMDIALQTLGATRTATDLAGSALVVPVRFAGVHVYGDITRGVRAVGSLAAAGDRLVGEVVLTDANGQPLLVVDEVEMAVL 1217
                                   935       945       955       965       975       985       995      1005      1015      1025    ||1038      1048   || 1070      1080      1090      1100      1110      1120      1130      1140     |1161      1171      1181      1191      1201      1211      
                                                                                                                                 1030|              1052|                                                                             1146|                                                           
                                                                                                                                  1034               1065                                                                              1158
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5NJI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5NJI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5NJI)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

4ooc WILD-TYPE DH DOMAIN FROM PPSC
5i0k H959F VARIANT OF DH DOMAIN FROM PPSC IN COMPLEX WITH C4:1-COA
5l84 H959F VARIANT OF DH DOMAIN FROM PPSC