5CEM - JenaLib

Title :   PSEUDOKINASE AND C-TERMINAL EXTENSION OF HUMAN TRIBBLES HOMOLOG 1

Authors :   P. D. Mace, Y. Nakatani

Date :   07 Jul 15 (Deposition) - 11 Nov 15 (Release) - 18 Nov 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : A

Keywords :   Kinase, Kinase-Like, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. M. Murphy, Y. Nakatani, S. A. Jamieson, W. Dai, I. S. Lucet, P. D. Mace
Molecular Mechanism Of Ccaat-Enhancer Binding Protein Recruitment By The Trib1 Pseudokinase.
Structure V. 23 2111 2015
PubMed-ID: 26455797 | Reference-DOI: 10.1016/J.STR.2015.08.017

Compounds

Molecule 1 - TRIBBLES HOMOLOG 1
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 83-371
	Gene	:	TRIB1, C8FW, GIG2, TRB1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	TRB-1,G-PROTEIN-COUPLED RECEPTOR-INDUCED GENE 2 PROTEIN,GIG- 2,SKIP1

Structural Features

Chains, Units

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 4)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:168 , LYS A:207 , LEU A:208 , ARG A:209 , LEU A:239 , TYR A:248 , TYR A:282 , HOH A:568	binding site for residue SO4 A 401
2	AC2	SOFTWARE	GLN A:128 , ARG A:132 , ARG A:178 , GLU A:179 , HOH A:550	binding site for residue SO4 A 402
3	AC3	SOFTWARE	GLN A:300 , ILE A:303 , ARG A:312 , ARG A:316 , HOH A:546 , HOH A:561	binding site for residue SO4 A 403
4	AC4	SOFTWARE	ARG A:320 , ARG A:321 , HOH A:519	binding site for residue SO4 A 404

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee..eeeee......eeeeee.....eeeeeeeehhhhhhhhhhhhh.......eeeeee...eeeeee.....hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.......eee.................hhhhhh.....hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.........hhhhhhhhhhhh..hhhhh.hhhhhh.hhhhhhhh...eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5cem A  88 PSRIADYLLLPLAEREHVSRALCIHTGRELRCKVFPIKHYQDKIRPYIQLPSNITGIVEVILGETKAYVFFEKDFGDMHSYVRSRKRLREEEAARLFKQIVSAVAHCHQSAIVLGDLKLRKFVFSTEERTQLRLESLEDALSDKHGCPAYVSPEILNTTGTYSGKAADVWSLGVMLYTLLVGRYPFHDSDPSALFSKIRRGQFCIPEHISPKARCLIRSLLRREPSERLTAPEILLHPWFESVLIVPEYQED 364
                                    97       107       117       127       137 ||    149       159       169       179       189       199       209       219       238       248       258       268       278       288       298       308       318       328       338   ||  362  
                                                                             139|                                                                                   228|                                                                                                     342|       
                                                                              142                                                                                    238                                                                                                      357

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (23, 23)

Visualization

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Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
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	Sites
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		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 5cem)

Still Images

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	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format \| Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
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	5cem
		Family and Domain Information	:	ProDom \| SYSTERS
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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Access by UniProt ID/Accession number
	TRIB1_HUMAN \| Q96RU8
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Description