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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE LIPOPROTEIN FROM THE DUF903 FAMILY (KPN_03160) FROM KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE MGH 78578 AT 2.30 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  29 Jun 15  (Deposition) - 22 Jul 15  (Release) - 22 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,E  (2x)
Biol. Unit 2:  C,D,F  (2x)
Keywords :  Lipoprotein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Lipid- Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Lipoprotein From The Duf903 Family (Kpn_03160) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2. 30 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE LIPOPROTEIN FROM THE DUF903 FAMILY
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YGDI, YP_001336791.1
    Organism Scientific: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE
    Organism Taxid: 272620
    Strain: ATCC 700721 / MGH 78578

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (2x): AB  E 
Biological Unit 2 (2x):   CD F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 21)

Asymmetric Unit (2, 21)
No.NameCountTypeFull Name
1CL9Ligand/IonCHLORIDE ION
2MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 12)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:46binding site for residue CL A 101
2AC2SOFTWAREARG A:65binding site for residue CL A 102
3AC3SOFTWAREASN B:46binding site for residue CL B 101
4AC4SOFTWAREARG B:65 , HOH B:229 , HOH E:232binding site for residue CL B 102
5AC5SOFTWAREASP C:45 , ASN C:46binding site for residue CL C 101
6AC6SOFTWAREASP D:45 , ASN D:46binding site for residue CL D 101
7AC7SOFTWAREHOH D:210 , ASN E:46 , HOH E:214binding site for residue CL E 101
8AC8SOFTWAREASN F:46binding site for residue CL F 101
9AC9SOFTWAREARG F:65binding site for residue CL F 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CAI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CAI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CAI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CAI)

(-) Exons   (0, 0)

(no "Exon" information available for 5CAI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:53
                                                                                    
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeee....ee......eeee.....eeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                  5cai A 23 SSNYVmHTNDGRTIVTDGKPQTDNDTGmISYKDAWGNKQQINRSDVKQLGELD 75
                                 |  32        42       |52        62        72   
                                 |                    50-MSE                     
                                28-MSE                                           


Chain B from PDB  Type:PROTEIN  Length:53
                                                                                    
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeee....ee......eeee.....eeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                  5cai B 23 SSNYVmHTNDGRTIVTDGKPQTDNDTGmISYKDAWGNKQQINRSDVKQLGELD 75
                                 |  32        42       |52        62        72   
                                28-MSE                50-MSE                     


Chain C from PDB  Type:PROTEIN  Length:52
                                                                                   
               SCOP domains ---------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....eeee....ee......eeee.....eeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                  5cai C 24 SNYVmHTNDGRTIVTDGKPQTDNDTGmISYKDAWGNKQQINRSDVKQLGELD 75
                                |   33        43      | 53        63        73  
                               28-MSE                50-MSE                     


Chain D from PDB  Type:PROTEIN  Length:53
                                                                                    
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeee....ee......eeee.....eeeehhh.eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                  5cai D 23 SSNYVmHTNDGRTIVTDGKPQTDNDTGmISYKDAWGNKQQINRSDVKQLGELD 75
                                 |  32        42       |52        62        72   
                                28-MSE                50-MSE                     


Chain E from PDB  Type:PROTEIN  Length:52
                                                                                   
               SCOP domains ---------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....eeee....ee......eeee.....eeeehhh.eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                  5cai E 24 SNYVmHTNDGRTIVTDGKPQTDNDTGmISYKDAWGNKQQINRSDVKQLGELD 75
                                |   33        43      | 53        63        73  
                               28-MSE                50-MSE                     


Chain F from PDB  Type:PROTEIN  Length:53
                                                                                    
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeee....ee......eeee.....eeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                  5cai F 23 SSNYVmHTNDGRTIVTDGKPQTDNDTGmISYKDAWGNKQQINRSDVKQLGELD 75
                                 |  32        42       |52        62        72   
                                28-MSE                50-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CAI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CAI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CAI)

(-) Gene Ontology  (0, 0)

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