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(-) Description

Title :  STRUCTURE OF LEISHMANIA NUCLEOSIDE DIPHOSPHATE KINASE MUTANT P100S/DEL5-CTERM
 
Authors :  P. S. Vieira, P. O. De Giuseppe, A. H. C. De Oliveira, M. T. Murakami
Date :  29 Jun 15  (Deposition) - 14 Oct 15  (Release) - 25 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Leishmania Major, Nucleoside Diphosphate Kinase, Site Directed- Mutagenesis, Quaternary Structure, Conformational Stability, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. S. Vieira, P. O. De Giuseppe, A. H. De Oliveira, M. T. Murakami
The Role Of The C-Terminus And Kpn Loop In The Quaternary Structure Stability Of Nucleoside Diphosphate Kinase From Leishmania Parasites.
J. Struct. Biol. V. 192 336 2015
PubMed-ID: 26410384  |  Reference-DOI: 10.1016/J.JSB.2015.09.009

(-) Compounds

Molecule 1 - NUCLEOSIDE DIPHOSPHATE KINASE
    Chains: A, B
    EC Number: 2.7.4.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-146
    Gene: L1648.07, LMJF_32_2950
    Mutation: YES
    Organism Scientific: LEISHMANIA MAJOR
    Organism Taxid: 5664

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5CAA)

(-) Sites  (0, 0)

(no "Site" information available for 5CAA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CAA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CAA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CAA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CAA)

(-) Exons   (0, 0)

(no "Exon" information available for 5CAA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeehhhhhhh.hhhhhhhhhhhh..eeeeeeee..hhhhhhhhhhhhh...hhhhhhhhhh...eeeeeee..hhhhhhhhhhh..........hhhhhhh.......eee..hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5caa A   2 SSERTFIAVKPDGVQRGLVGEIIARFERKGYKLVALKILQPTTEQAQGHYKDLCSKPFFPALVKYFSSGPIVCMVWEGKNVVKSGRVLLGATNPADSQSGTIRGDFAVDVGRNVCHGSDSVESAEREIAFWFKADEI 138
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       


Chain B from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeehhhhhhh.hhhhhhhhhhhh..eeeeeeee..hhhhhhhhhhhhh...hhhhhhhhhh...eeeeeee..hhhhhhhhhhh..hhhhh...hhhhhhh.......eee..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5caa B   2 SSERTFIAVKPDGVQRGLVGEIIARFERKGYKLVALKILQPTTEQAQGHYKDLCSKPFFPALVKYFSSGPIVCMVWEGKNVVKSGRVLLGATNPADSQSGTIRGDFAVDVGRNVCHGSDSVESAEREIAFWFKADEIA 139
                                    11        21        31        41        51        61        71        81        91       101       111       121       131
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CAA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CAA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CAA)

(-) Gene Ontology  (14, 14)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9U1E1_LEIMA | Q9U1E1: 3ngr 3ngs 3ngt 3ngu 5c7p 5cab

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