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(-) Description

Title :  1.45A RESOLUTION STRUCTURE OF SRPN18 FROM ANOPHELES GAMBIAE
 
Authors :  S. Lovell, K. P. Battaile, M. Gulley, X. Zhang, D. A. Meekins, F. P. Gao, K
Date :  26 Jun 15  (Deposition) - 14 Sep 16  (Release) - 14 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Serpin, Serine Protease, Insect Immunity, Enzyme Inhibitor, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. A. Meekins, X. Zhang, K. P. Battaile, S. Lovell, K. Michel
1. 45 Angstrom Resolution Structure Of Srpn18 From The Malaria Vector Anopheles Gambiae.
Acta Crystallogr F Struct V. 72 853 2016 Biol Commun
PubMed-ID: 27917832  |  Reference-DOI: 10.1107/S2053230X16017854

(-) Compounds

Molecule 1 - AGAP007691-PB
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3) PRARE
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SRPN18, AGAP_AGAP007691
    Organism Common: AFRICAN MALARIA MOSQUITO
    Organism Scientific: ANOPHELES GAMBIAE
    Organism Taxid: 7165

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5C98)

(-) Sites  (0, 0)

(no "Site" information available for 5C98)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C98)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Pro A:173 -Pro A:174
2Pro B:173 -Pro B:174

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C98)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C98)

(-) Exons   (0, 0)

(no "Exon" information available for 5C98)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:359
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh....eeeeeeeeee.....hhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh........hhhhhh.......eeeeeeeee........hhhhheeee.........eeeeeeeeeeeeeeee....eeeeeee.hhhh.eeeeeeee....hhhhhhhhhhhhhhhhhhhhheeeeeeeeee..eeeeeehhhhhhhhh..hhhhhh...............eeeeeeeee........eeee....eeeeeee.....eeeeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c98 A  23 DDAIVAANNKFTLEYFKACYDEKCNCAVSPYHVRLALSMFYPLAGAAVQEDFQVAFGLPEDVHAAIEQQQRLAQQLHDGQHLKALSFVLVEETLRLDSEFERLFHRTFQTTVEPVDLTDDIPSALAVNSFYQRANTEIEDFIGEGDVFSLPPCHKLMLFSGVSVLTPLAIRFNPADTALELFQFINAPTQRVSTMHTTAFVRRCLHNELRCKVVDMPFDAASGLSMLVLLPYDGTELRQIVNSITPAHLAQIDERLQSCWTDLKLPKFFVREKTDPKQTLGKLGYGGVFEIDDLHVFHDSGRTRLNGFIQHCYLAVSESGSSEFEFHANRPFMFLIRRTMDGNVLQVGNFSKYIDPDEQ 390
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342||     361       371       381         
                                                                                                                                                                                                                                                                                                                                                          343|                                     
                                                                                                                                                                                                                                                                                                                                                           353                                     


Chain B from PDB  Type:PROTEIN  Length:364
                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh....eeeeeeeeee.....hhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh........hhhhhh.......eeeeeeeee........hhhhheeee.........eeeeeeeeeeeeeeee....eeeeeee.hhhh.eeeeeeee....hhhhhhhhhhhhhhhhhhhhheeeeeeeeee.eeeeeeehhhhhhhhh..hhhhhh...............eeeeeeeeee..............eeee....eeeeeee.....eeeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c98 B  23 DDAIVAANNKFTLEYFKACYDEKCNCAVSPYHVRLALSMFYPLAGAAVQEDFQVAFGLPEDVHAAIEQQQRLAQQLHDGQHLKALSFVLVEETLRLDSEFERLFHRTFQTTVEPVDLTDDIPSALAVNSFYQRANTEIEDFIGEGDVFSLPPCHKLMLFSGVSVLTPLAIRFNPADTALELFQFINAPTQRVSTMHTTAFVRRCLHNELRCKVVDMPFDAASGLSMLVLLPYDGTELRQIVNSITPAHLAQIDERLQSCWTDLKLPKFFVREKTDPKQTLGKLGYGGVFEIDDLHVFHDSGRTRLNGFIQHCYLAVSESGIPAPPDTPSEFEFHANRPFMFLIRRTMDGNVLQVGNFSKYIDPD 388
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       344       354       364       374       384    
                                                                                                                                                                                                                                                                                                                                                        341|                                            
                                                                                                                                                                                                                                                                                                                                                         344
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C98)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C98)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C98)

(-) Gene Ontology  (3, 3)

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    Pro A:173 - Pro A:174   [ RasMol ]  
    Pro B:173 - Pro B:174   [ RasMol ]  
 
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