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(-) Description

Title :  5'-MONOPHOSPHATE WT GUANINE RIBOSWITCH BOUND TO HYPOXANTHINE.
 
Authors :  A. R. Hernandez, Y. Shao, S. Hoshika, Z. Yang, S. A. Shelke, J. Herrou, H. M. -J. Kim, J. A. Piccirilli, S. A. Benner
Date :  24 Jun 15  (Deposition) - 12 Aug 15  (Release) - 19 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.05
Chains :  Asym./Biol. Unit :  B
Keywords :  Expanded Rna; Riboswitch; Unnatural Base Pair, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. R. Hernandez, Y. Shao, S. Hoshika, Z. Yang, S. A. Shelke, J. Herrou, H. J. Kim, M. J. Kim, J. A. Piccirilli, S. A. Benner
A Crystal Structure Of A Functional Rna Molecule Containing An Artificial Nucleobase Pair.
Angew. Chem. Int. Ed. Engl. V. 54 9853 2015
PubMed-ID: 26223188  |  Reference-DOI: 10.1002/ANIE.201504731

(-) Compounds

Molecule 1 - 5'-MONOPHOSPHATE WT GUANINE RIBOSWITCH
    Chains: B
    Engineered: YES
    Organism Scientific: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
    Organism Taxid: 224308
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1HPA1Ligand/IonHYPOXANTHINE
2NCO7Ligand/IonCOBALT HEXAMMINE(III)

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREC B:61 , G B:62 , C B:81binding site for residue NCO B 101
2AC2SOFTWAREG B:37 , G B:38binding site for residue NCO B 102
3AC3SOFTWAREG B:55 , G B:56 , G B:57 , G B:68 , U B:69binding site for residue NCO B 103
4AC4SOFTWAREG B:46 , U B:47 , C B:50 , U B:51binding site for residue NCO B 104
5AC5SOFTWAREU B:30 , G B:31 , G B:32 , A B:66binding site for residue NCO B 105
6AC6SOFTWAREA B:23 , A B:24 , C B:71binding site for residue NCO B 106
7AC7SOFTWAREG B:27 , U B:67 , G B:68 , U B:69binding site for residue NCO B 107
8AC8SOFTWAREA B:21 , U B:22 , U B:47 , U B:51 , A B:52 , A B:73 , C B:74 , U B:75binding site for residue HPA B 108

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C7U)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain B from PDB  Type:RNA  Length:67
                                                                                                  
                  5c7u B 15 GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGACUAUGUCC 81
                                    24        34        44        54        64        74
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C7U)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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5c7w