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(-) Description

Title :  BACTERIOPHAGE P2 INTEGRASE CATALYTIC DOMAIN
 
Authors :  K. Skaar, M. Claesson, R. Odegrip, J. Eriksson, M. Hogbom, E. Haggard- Ljungquist, P. Stenmark
Date :  23 Jun 15  (Deposition) - 21 Oct 15  (Release) - 02 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Integrase, Tyrosine Recombinase, Integration, Site-Specific Recombination, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Skaar, M. Claesson, R. Odegrip, M. Hogbom, E. Haggard-Ljungquist, P. Stenmark
Crystal Structure Of The Bacteriophage P2 Integrase Catalytic Domain.
Febs Lett. V. 589 3556 2015
PubMed-ID: 26453836  |  Reference-DOI: 10.1016/J.FEBSLET.2015.09.026

(-) Compounds

Molecule 1 - INTEGRASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET8C
    Expression System Taxid: 469008
    Expression System Variant: PLYSS
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 46-337
    Gene: INT
    Organism Scientific: ENTEROBACTERIA PHAGE P2
    Organism Taxid: 10679

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5C6K)

(-) Sites  (0, 0)

(no "Site" information available for 5C6K)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C6K)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5C6K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C6K)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5C6K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:165
                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.hhh.ee..eeee........eeee.hhhhhhhhh...........hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhh....hhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c6k A 162 TGYLTQEEIALLLAALDGDNKKIAILCLSTGARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISEAVAKMIADNKRGFLFPDADYPRFRRTMKAIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAISLNPLRGGTE 326
                                   171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321     


Chain B from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.hhh.ee..eeee.......eeee.hhhhhhhhhh..........hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhh....hhhhhh............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c6k B 163 GYLTQEEIALLLAALDGDNKKIAILCLSTGARWGEAARLKAENIIHNRVTFVKTTNKPRTVPISEAVAKMIADNKRGFLFPDADYPRFRRTMKAIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAISLNPLRGGTEAESV 330
                                   172       182       192       202       212   ||  223       233       243       253       263       273       283       293       303       313       323       
                                                                               216|                                                                                                                
                                                                                218
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C6K)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VINT_BPP2 | P36932: 5dor

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