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(-) Description

Title :  CRYSTAL STRUCTURE OF NADP-DEPENDENT DEHYDROGENASE FROM RHODOBACTER SPHAEROIDES
 
Authors :  M. Kowiel, O. A. Gasiorowska, I. G. Shabalin, K. B. Handing, P. J. Porebs M. Cymborowski, N. F. Al Obaidi, J. Bonanno, S. C. Almo, W. Minor, New Structural Genomics Research Consortium (Nysgrc)
Date :  19 Jun 15  (Deposition) - 01 Jul 15  (Release) - 01 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kowiel, O. A. Gasiorowska, I. G. Shabalin, K. B. Handing, P. J. Porebski, J. Bonanno, S. C. Almo, W. Minor
Crystal Structures Of Nadp-Dependent Dehydrogenase From Rhodobacter Sphaeroides
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NADP-DEPENDENT DEHYDROGENASE
    Chains: A, B
    EC Number: 1.1.1.79, 1.1.1.81
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSGC-HIS
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RSP_3442
    Organism Scientific: RHODOBACTER SPHAEROIDES
    Organism Taxid: 272943
    Other Details: BEFORE CRYSTALLIZATION PROTEIN WAS INCUBATED WITH 1/50 V/V OF 2 MG/ML CHYMOTRYPSIN.
    Strain: ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5C5I)

(-) Sites  (0, 0)

(no "Site" information available for 5C5I)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C5I)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:257 -Pro A:258
2Glu B:257 -Pro B:258

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C5I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C5I)

(-) Exons   (0, 0)

(no "Exon" information available for 5C5I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..hhhhhhhhhhhhhhhh....eee.hhhhhhhhhheeeeeee..hhhhhh......eeee....hhhhhhhhhhhh..ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhh.eeeee..hhhhhhhhhhhhhh..eeeeee.........eeeehhhhhhhhhhh..eeee............hhhhhhhh...eeeee..hhhhhhhhhhhhhhhhh.eeeeee...................eee........hhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c5i A  -2 FQSMSRIALVTRLSPEAEAHWAGHLARALPGERIDGFRELSPAERAEVDIAIVANPDPADLAELPNLVWIHSLWAGVERLVAELGHLARPIVRLVDPELARTMAEAALAWTYYLFRDMPAYAAQQRARVWKGLPYKRPERTTVGVLGLGELGAAAALRLRDAGFDVHGWSRSPKEIAGVTCHAGEETLERMLGQVEILVCLLPLTGETRGLLDARRLACLPEGAQIVNFARGPILDSAALIEALDSGRIGHAVLDVFEVEPLPEASPFWGHPKVTVLPHISAATDPETASAIVGAHVADYRATGRIPPSVD 308
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307 


Chain B from PDB  Type:PROTEIN  Length:309
                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..hhhhhhhhhhhhhhhh....eee.hhhhhhhhhheeeeeee..hhhhhh......eeee....hhhhhhhhhhhh..ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhh.eeeee..hhhhhhhhhhhhhh..eeeeee.........eeeehhhhhhhhhhh..eeee............hhhhhhhh...eeeee..hhhhhhhhhhhhhhhhh.eeeeee...................eee..hhhhh.hhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c5i B   0 SMSRIALVTRLSPEAEAHWAGHLARALPGERIDGFRELSPAERAEVDIAIVANPDPADLAELPNLVWIHSLWAGVERLVAELGHLARPIVRLVDPELARTMAEAALAWTYYLFRDMPAYAAQQRARVWKGLPYKRPERTTVGVLGLGELGAAAALRLRDAGFDVHGWSRSPKEIAGVTCHAGEETLERMLGQVEILVCLLPLTGETRGLLDARRLACLPEGAQIVNFARGPILDSAALIEALDSGRIGHAVLDVFEVEPLPEASPFWGHPKVTVLPHISAATDPETASAIVGAHVADYRATGRIPPSVD 308
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C5I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C5I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C5I)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
(no "Sites" information available for 5c5i)
 
  Cis Peptide Bonds
    Glu A:257 - Pro A:258   [ RasMol ]  
    Glu B:257 - Pro B:258   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q3IWN8_RHOS4 | Q3IWN8: 4zqb

(-) Related Entries Specified in the PDB File

4zqb 4ZQB CONTAINS THE SAME PROTEIN COMPLEXED WITH NADP AND SULFATE RELATED ID: NYSGRC-014667 RELATED DB: TARGETTRACK