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(-) Description

Title :  CRYSTAL STRUCTURE OF MAGNESIUM-BOUND DUF89 PROTEIN SACCHAROMYCES CEREVISIAE
 
Authors :  B. Nocek, M. Cuff, H. Cui, X. Xu, A. Savchenko, A. Joachimiak, A. Yakunin
Date :  09 Jun 15  (Deposition) - 29 Jul 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Duf89, Mg-Bound, Family Of Carbohydrate Phosphatases, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Nocek, M. Cuff, H. Cui, X. Xu, A. Savchenko, A. Joachimiak, A. Yakuni
Crystal Structure Of Magnesium-Bound Duf89 Protein Saccharomyces Cerevisiae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN-GLUTAMATE O-METHYLTRANSFERASE
    Chains: A
    EC Number: 2.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cell Line: BL21DE3
    Expression System Taxid: 469008
    Gene: YMR027W, YM9711.17
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2MSE7Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:254 , ASN A:255 , ASP A:292 , HOH A:710 , HOH A:713 , HOH A:850binding site for residue MG A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BY0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5BY0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BY0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BY0)

(-) Exons   (0, 0)

(no "Exon" information available for 5BY0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:465
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhh..hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeehhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhhhhhh....eeeeee..........hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh..hhhhh.......hhhhhhhhhh...eeeeehhhhhhhhhh........hhhhhhhhhhh....eeeeee...........hhhhhhhhhhhh....hhhhhhhh...eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5by0 A  -1 GHmTIPGRFmTIDKGTFGEYTASTRWPIIIQNAIDDLSKHQETEKSNGTKFEQGEVIKKELKEFRQEIIDRVPLRPFTEEEIKIANVPLSFNEYLKKHPEVNWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVVELALRYENLLPQLREmKQNDDILKVLFKEFIEISLWGNATDLSLLTNATLEDIKSIQGAKARAASESKIVVNDTEKAWEVLTKARADANSREIRVDFVLDNSGFELYADLmLAAFLLQSGLATKCIFHAKDIPYmVSDVmLKDFDILVHDLRDREFFPSGEPSTKESRALDLFAGEmEKFVSSGKIEFREDSFWTTELDYWNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWETAIGPLATNGITSLSLRTCKADVQVALPEGLDAKLSQEWEKENPGRGSWWCCSGKWAVICFCSGI 468
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158      |168|      183       193       203       213       223       233       243       253       263 |     273       283     | 293|      303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463     
                              |      8-MSE                                                                                                                                                      165-MSE                                                                                        265-MSE                 289-MSE|                                  331-MSE                                                                                                                                     
                              1-MSE                                                                                                                                                                168|                                                                                                                     294-MSE                                                                                                                                                                          
                                                                                                                                                                                                    174
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BY0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BY0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BY0)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        ARMT1_YEAST | Q04371: 3pt1 5f13

(-) Related Entries Specified in the PDB File

3pt1