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(-) Description

Title :  CRYSTAL STRUCTURE OF 4-COUMARATE:COA LIGASE COMPLEXED WITH FERULOYL ADENYLATE
 
Authors :  Z. Li, S. K. Nair
Date :  02 Jun 15  (Deposition) - 11 May 16  (Release) - 11 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  4-Coumarate:Coa Ligase, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Li, S. K. Nair
Structural Basis For Specificity And Flexibility In A Plant 4-Coumarate:Coa Ligase.
Structure V. 23 2032 2015
PubMed-ID: 26412334  |  Reference-DOI: 10.1016/J.STR.2015.08.012

(-) Compounds

Molecule 1 - 4-COUMARATE--COA LIGASE 2
    Chains: A
    EC Number: 6.2.1.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: 4CL2
    Organism Common: COMMON TOBACCO
    Organism Scientific: NICOTIANA TABACUM
    Organism Taxid: 4097
    Synonym: 4CL 2,4-COUMAROYL-COA SYNTHASE 2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
14UW1Ligand/Ion5'-O-[(R)-HYDROXY{[(2E)-3-(5-METHOXY-4-OXOCYCLOHEXA-1,5-DIEN-1-YL)PROP-2-ENOYL]OXY}PHOSPHORYL]ADENOSINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:237 , TYR A:239 , SER A:243 , ALA A:309 , ALA A:310 , PRO A:311 , GLN A:331 , GLY A:332 , TYR A:333 , GLY A:334 , MET A:335 , THR A:336 , VAL A:341 , MET A:344 , ASP A:420 , ARG A:435 , LYS A:437 , LYS A:441 , GLN A:446 , HOH A:757 , HOH A:816 , HOH A:898binding site for residue 4UW A 600

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BSV)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:339 -Pro A:340

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BSV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BSV)

(-) Exons   (0, 0)

(no "Exon" information available for 5BSV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:529
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhh.hhhhh...eeeee.....eeehhhhhhhhhhhhhhhhhh......eeee....hhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh.eeee........eehhhhhh.hhhhh.........eee..ee.......eeeeeehhhhhhhhhhhhh............eeee.....hhhhhhhhhhhhhhhh.eeee....hhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhhh......eeee.....hhhhhhhhh......eeeeeee.hhhh.eeee.hhhh............ee....eeeee.............eeeeee......ee..hhhhhhhhh.....eeeeeeeee.....eeeeee....eee..eeehhhhhhhhhhh...eeeeeeeeeee...eeeeeeeeee......hhhhhhhhhhh..hhhhh..eeee............hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bsv A   8 VDIIFRSKLPDIYIPNHLPLHSYCFENISEFSSRPCLINGANKQIYTYADVELNSRKVAAGLHKQGIQPKDTIMILLPNSPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIIVTQACHVNKVKDYAFENDVKIICIDSAPEGCLHFSVLTQANEHDIPEVEIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYIHSEDVMLCVLPLFHIYSLNSVLLCGLRVGAAILIMQKFDIVSFLELIQRYKVTIGPFVPPIVLAIAKSPMVDDYDLSSVRTVMSGAAPLGKELEDTVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPKTGNSLPRNQSGEICIRGDQIMKGYLNDPEATARTIDKEGWLYTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLNHPNISDAAVVPMKDEQAGEVPVAFVVRSNGSTITEDEVKDFISKQVIFYKRIKRVFFVDAIPKSPSGKILRKDLRAKL 536
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BSV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BSV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BSV)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        4CL2_TOBAC | O24146: 5bsm 5bsr 5bst 5bsu 5bsw 5u95

(-) Related Entries Specified in the PDB File

5bsm 5bsr 5bst 5bsu 5bsw