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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ISTB AAA+ DOMAIN BOUND TO ADP-BEF3
 
Authors :  E. Arias-Palomo, J. M. Berger
Date :  28 May 15  (Deposition) - 02 Sep 15  (Release) - 02 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Aaa+, Atpase, Transposition, Dna Binding, Atp-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Arias-Palomo, J. M. Berger
An Atypical Aaa+ Atpase Assembly Controls Efficient Transposition Through Dna Remodeling And Transposase Recruitment.
Cell V. 162 860 2015
PubMed-ID: 26276634  |  Reference-DOI: 10.1016/J.CELL.2015.07.037

(-) Compounds

Molecule 1 - INSERTION SEQUENCE IS5376 PUTATIVE ATP-BINDING PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 63-248
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422
    Synonym: ISTB

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 18)

Asymmetric Unit (4, 18)
No.NameCountTypeFull Name
1ADP3Ligand/IonADENOSINE-5'-DIPHOSPHATE
2BEF3Ligand/IonBERYLLIUM TRIFLUORIDE ION
3MG3Ligand/IonMAGNESIUM ION
4MSE9Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2BEF1Ligand/IonBERYLLIUM TRIFLUORIDE ION
3MG-1Ligand/IonMAGNESIUM ION
4MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (3, 5)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2BEF1Ligand/IonBERYLLIUM TRIFLUORIDE ION
3MG-1Ligand/IonMAGNESIUM ION
4MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (3, 5)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2BEF1Ligand/IonBERYLLIUM TRIFLUORIDE ION
3MG-1Ligand/IonMAGNESIUM ION
4MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:68 , THR A:72 , PHE A:73 , ASP A:74 , GLN A:78 , GLY A:108 , ILE A:109 , GLY A:110 , LYS A:111 , THR A:112 , HIS A:113 , TYR A:236 , MG A:302 , BEF A:303 , HOH A:404 , HOH A:449 , HOH A:457 , HOH A:483 , HOH A:490 , HOH A:493 , HOH A:499 , HOH A:531binding site for residue ADP A 301
2AC2SOFTWARETHR A:112 , ADP A:301 , BEF A:303 , HOH A:416 , HOH A:457 , HOH A:499binding site for residue MG A 302
3AC3SOFTWAREPRO A:107 , GLY A:108 , LYS A:111 , TYR A:170 , ARG A:221 , ARG A:237 , ADP A:301 , MG A:302 , HOH A:416 , HOH A:457 , HOH A:499 , HOH A:562binding site for residue BEF A 303
4AC4SOFTWARELYS B:68 , THR B:72 , PHE B:73 , ASP B:74 , GLY B:108 , ILE B:109 , GLY B:110 , LYS B:111 , THR B:112 , HIS B:113 , TYR B:236 , ARG B:237 , MG B:302 , BEF B:303 , HOH B:436 , HOH B:450 , HOH B:464 , HOH B:465 , HOH B:484 , HOH B:485 , HOH B:496 , HOH C:447binding site for residue ADP B 301
5AC5SOFTWARETHR B:112 , ADP B:301 , BEF B:303 , HOH B:426 , HOH B:436 , HOH B:465binding site for residue MG B 302
6AC6SOFTWAREPRO B:107 , GLY B:108 , LYS B:111 , TYR B:170 , ARG B:237 , ADP B:301 , MG B:302 , HOH B:426 , HOH B:436 , HOH B:465 , HOH B:525 , ARG C:221binding site for residue BEF B 303
7AC7SOFTWARELYS C:68 , THR C:72 , PHE C:73 , ASP C:74 , PRO C:107 , GLY C:108 , ILE C:109 , GLY C:110 , LYS C:111 , THR C:112 , HIS C:113 , TYR C:236 , ARG C:237 , MG C:302 , BEF C:303 , HOH C:428 , HOH C:437 , HOH C:451 , HOH C:471 , HOH C:480 , HOH C:491 , HOH C:497 , HOH C:511binding site for residue ADP C 301
8AC8SOFTWARETHR C:112 , ADP C:301 , BEF C:303 , HOH C:430 , HOH C:437 , HOH C:497binding site for residue MG C 302
9AC9SOFTWAREARG B:221 , PRO C:107 , GLY C:108 , LYS C:111 , TYR C:170 , ARG C:237 , ADP C:301 , MG C:302 , HOH C:430 , HOH C:437 , HOH C:497 , HOH C:540binding site for residue BEF C 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BQ5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5BQ5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BQ5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BQ5)

(-) Exons   (0, 0)

(no "Exon" information available for 5BQ5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh........hhhhhhhhh.hhhhhh..eeeee.....hhhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhh.hhhhhhhhhhh..eeeeeee........hhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhhhhhhhhhhheeeee....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5bq5 A  67 RKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGmEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDEmGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAmLDRLLHHSIIFNLKGESYRLREKRLQEE 246
                                    76        86        96       106       116   |   126       136       146       156       166 |     176       186       196       206       216 |     226       236       246
                                                                               120-MSE                                         168-MSE                                           218-MSE                        


Chain B from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh........hhhhhhhhh.hhhhhh..eeeee.....hhhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhh.hhhhhhhhhhh..eeeeeee.........hhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhhhhhhhhhhheeeee....hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bq5 B  62 NKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGmEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDEmGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAmLDRLLHHSIIFNLKGESYRLREKRLQEEKQ 248
                                    71        81        91       101       111       121       131       141       151       161      |171       181       191       201       211      |221       231       241       
                                                                                    120-MSE                                         168-MSE                                           218-MSE                          


Chain C from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh........hhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhh.hhhhhhhhhhh..eeeeeee.........hhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhhhhhhhhhhheeeee....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5bq5 C  67 RKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGmEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKPTVLIIDEmGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIVGDSVLATAmLDRLLHHSIIFNLKGESYRLREKRLQEE 246
                                    76        86        96       106       116   |   126       136       146       156       166 |     176       186       196       206       216 |     226       236       246
                                                                               120-MSE                                         168-MSE                                           218-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BQ5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BQ5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BQ5)

(-) Gene Ontology  (2, 2)

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