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(-) Description

Title :  ATOMIC-RESOLUTION STRUCTURES OF THE APC/C SUBUNITS APC4 AND THE APC5 N-TERMINAL DOMAIN
 
Authors :  K. Kulkarni, J. Yang, Z. Zhang, D. Barford
Date :  28 May 15  (Deposition) - 02 Sep 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Apc4, Apc/C, Anaphase Promoting Complex, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. B. Cronin, J. Yang, Z. Zhang, K. Kulkarni, L. Chang, H. Yamano, D. Barford
Atomic-Resolution Structures Of The Apc/C Subunits Apc4 And The Apc5 N-Terminal Domain.
J. Mol. Biol. V. 427 3300 2015
PubMed-ID: 26343760  |  Reference-DOI: 10.1016/J.JMB.2015.08.023

(-) Compounds

Molecule 1 - ANAPHASE-PROMOTING COMPLEX SUBUNIT 4
    ChainsA
    EngineeredYES
    Expression SystemTRICHOPLUSIA NI
    Expression System CommonCABBAGE LOOPER
    Expression System Taxid7111
    GeneANAPC4, APC4
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymAPC4,CYCLOSOME SUBUNIT 4

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5BPW)

(-) Sites  (0, 0)

(no "Site" information available for 5BPW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BPW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:572 -Pro A:573

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BPW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BPW)

(-) Exons   (0, 0)

(no "Exon" information available for 5BPW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:659
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee....eeeeee.....eeeeee....eeeee.hhh.eeeee.........eeeeee.....eeeeee....eeeeee.....eeeeee......eeeeee.............hhhhh.......................hhhhhhhhhh...eeeeee....eeeeee....eeeeee....eeeeeee.....eeeeeeee.....eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh.hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeee..............eeeee....eeeeeeeee....eeeeeeeee..........eeeeeeeeee......ee...eeeeeeeeee..eeeeeeee........eeeeeee.hhh...hhhhhh..................eeeeee...eee.......eeee.....eeeee.....eeeeee............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bpw A   6 TCFPSFRVVGEKQLPQEIIFLVWSPKRDLIALANTAGEVLLHRLASFHRVWSFPPNENTGKEVTCLAWRPDGKLLAFALADTKKIVLCDVEKPESLHSFSVEAPVSCMHWMEVTVESSVLTSFYEDESNLLLPKLPTLPKNYSNTSKIFSEENSDEIIKLLGDVRLNILVLGGSSGFIELYAYGMFKIARVTGIAGTCLALCLSSDLKSLSVVTEVSTNGASEVSYFQLETNLLYSFLPEVTRMARKFTHISALLQYINLSLTCMCEAWEEILMQMDSRLKNTTTSVQDEQTLLMNQLTVKGLKKLGQSIESSYSSIQKLVISHLQSGSESLLYHLSELKGMASWKQKYEPLGLDAAGIEEAITAVGSFILKANELLQVIDSSMKNFKAFFRWLYVAMLRMTEITFVAEFLTEHFNERVGQYLLHFVKRRMENIIDQCLQKPADVIGKSMNQAICIPLYRDTRSEDSTRRLFKFPFLWNNKTSNLHYLLFTILEDSLYKMCILRRHTDISQSVSNGLIAIKFGSFTYATTEKVRRSIYSCLDAQFYDDETVTVVLKDTVGREGRDRLLVQLPLSLVYNSEDSAEYQFTGTYSTRLDEQCSAIPTRTMHFEKHWRLLESMKAQYVAGNGFRKVSCVLSSNLRHVRVFEMDIDDEWELDES 757
                                    15        25        35        45        55        65        75        85        95       105       115       125   ||  137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287|      303|      327       337       347       357       367       377       387       397       407       417       427  ||   451     ||476  ||   528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748         
                                                                                                                                                     129|                                                                                                                                                        287|      303|                                                                                                             430|         457|   479|                                                                                                                                                                                                                                           
                                                                                                                                                      132                                                                                                                                                         294       318                                                                                                              445          473    522                                                                                                                                                                                                                                           

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BPW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BPW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BPW)

(-) Gene Ontology  (18, 18)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Phe A:572 - Pro A:573   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        APC4_HUMAN | Q9UJX54ui9 5a31 5g04 5g05 5khr 5khu 5l9t 5l9u 5lcw

(-) Related Entries Specified in the PDB File

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