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(-) Description

Title :  CRYSTAL STRUCTURE OF STREPTOCOCCUS PNEUMONIA PARE INHIBITOR
 
Authors :  Y. W. Tan, G. Chen, A. W. Hung, J. Hill
Date :  27 May 15  (Deposition) - 17 Jun 15  (Release) - 17 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Inhibitor, Topoisomerase, Pare, Isomerase-Isomerase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Y. Chen, F. M. Ng, Y. W. Tan, A. Poulsen, W. Seetoh, G. Lin, C. Kang, S. W. Then, N. H. Ahmad, Y. L. Wong, H. Q. Ng, B. C. S. Chia, Q. Y. Lau, J. Hill, A. W. Hung, T. H. Keller
Application Of Fragment-Based Drug Discovery Against Dna Gyraseb
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA TOPOISOMERASE 4 SUBUNIT B
    Chains: A
    EC Number: 5.99.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 1-226
    Gene: PARE, SPR0756
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE R6
    Organism Taxid: 171101
    Strain: R6
    Synonym: TOPOISOMERASE IV SUBUNIT B

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1TTJ1Ligand/Ion(2R)-N-[3-(3,5-DIMETHYLPHENYL)-1H-PYRAZOL-5-YL]-1,4-DIOXANE-2-CARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:48 , ASN A:51 , GLU A:55 , ASP A:78 , ARG A:81 , GLY A:82 , MET A:83 , SER A:124 , VAL A:174 , HOH A:409binding site for residue TTJ A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BOD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5BOD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BOD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BOD)

(-) Exons   (0, 0)

(no "Exon" information available for 5BOD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....eeeeee.....eeee..........hhhhhhhhhhhhhh....hhhhhhheeeeeeeeee..eeeeeeee...ee....eeeee......eeeeeeee..........hhhhhhhhhhhhhhhhh..eeeeee.....eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5bod A  17 QVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGTALKSKTGTKVTFMPDATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAIEFHYEN 226
                                    26        36        46        56        66        76        86        96       124       134       144       154       164       174       184       194       204       214       224  
                                                                                                                 104|                                                                                                       
                                                                                                                  123
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BOD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BOD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BOD)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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  5bod
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8DQB5_STRR6 | Q8DQB5: 4lp0 4lpb 4mot 5boc

(-) Related Entries Specified in the PDB File

5boc