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(-) Description

Title :  MONOMER OF TALE TYPE HOMEOBOX TRANSCRIPTION FACTOR MEIS1 COMPLEXES WITH SPECIFIC DNA
 
Authors :  E. Morgunova, A. Jolma, Y. Yin, K. Nitta, K. Dave, A. Popov, M. Taipale, M T. Kivioja, J. Taipale
Date :  26 May 15  (Deposition) - 04 Nov 15  (Release) - 02 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym. Unit :  A,B,C,D,L,M
Biol. Unit 1:  B,L,M  (1x)
Biol. Unit 2:  A,C,D  (1x)
Keywords :  Protein-Dna Complex, Transcription Factor, Tale Type Homeobox Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Jolma, Y. Yin, K. R. Nitta, K. Dave, A. Popov, M. Taipale, M. Enge, T. Kivioja, E. Morgunova, J. Taipale
Dna-Dependent Formation Of Transcription Factor Pairs Alter Their Binding Specificity.
Nature V. 527 384 2015
PubMed-ID: 26550823  |  Reference-DOI: 10.1038/NATURE15518

(-) Compounds

Molecule 1 - HOMEOBOX PROTEIN MEIS2
    Chains: B, A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PETG20A
    Expression System Taxid: 469008
    Expression System Variant: PLYSS
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 283-342
    Gene: MEIS2, MRG1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MEIS1-RELATED PROTEIN 1
 
Molecule 2 - DNA (5'-D(P*TP*TP*AP*GP*CP*TP*GP*TP*CP*A)-3')
    Chains: L
    Engineered: YES
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES
 
Molecule 3 - DNA (5'-D(P*TP*GP*AP*CP*AP*GP*CP*TP*AP*A-3')
    Chains: M
    Engineered: YES
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES
 
Molecule 4 - DNA (5'-D(P*AP*AP*TP*TP*AP*GP*CP*TP*GP*TP*CP*A)-3')
    Chains: C
    Engineered: YES
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES
 
Molecule 5 - DNA (5'-D(P*TP*GP*AP*CP*AP*GP*CP*TP*AP*A)-3')
    Chains: D
    Engineered: YES
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDLM
Biological Unit 1 (1x):  B  LM
Biological Unit 2 (1x): A CD  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5BNG)

(-) Sites  (0, 0)

(no "Site" information available for 5BNG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BNG)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ala A:35 -Gln A:36
2Leu A:40 -Thr A:41

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BNG)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5BNG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:59
                                                                                          
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh......hhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  5bng A  6 PKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64
                                    15        25        35        45        55         


Chain B from PDB  Type:PROTEIN  Length:60
                                                                                           
               SCOP domains ------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.......hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                  5bng B  5 FPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64
                                    14        24        34        44        54        64


Chain C from PDB  Type:DNA  Length:12
                                           
                  5bng C 24 GATTAGCTGTCA 35
                                    33  


Chain D from PDB  Type:DNA  Length:10
                                         
                  5bng D  4 TGACAGCTAA 13
                                    13


Chain L from PDB  Type:DNA  Length:10
                                         
                  5bng L 26 TTAGCTGTCA 35
                                    35


Chain M from PDB  Type:DNA  Length:12
                                           
                  5bng M  4 TGACAGCTAACG 16
                                    13| 
                                    13| 
                                     15
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BNG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BNG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BNG)

(-) Gene Ontology  (24, 24)

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  Cis Peptide Bonds
    Ala A:35 - Gln A:36   [ RasMol ]  
    Leu A:40 - Thr A:41   [ RasMol ]  
 
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  5bng
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MEIS2_HUMAN | O14770: 3k2a 4xrm 5eg0

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