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(-) Description

Title :  CRYSTAL STRUCTURE OF TYPE III PANTOTHENATE KINASE (PANK III) FROM BURKHOLDERIA CENOCEPACIA COMPLEXED WITH PANTOTHENATE, IMIDODIPHOSPHATE, AND AMP
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  27 Apr 15  (Deposition) - 13 May 15  (Release) - 13 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ssgcid, Type Iii Pantothenate Kinase, Burkholderia Cenocepacia, Coax, Coa Biosynthesis, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Ssgcid, D. M. Dranow, J. Abendroth, D. Lorimer, T. E. Edwards
Crystal Structure Of Type Iii Pantothenate Kinase (Pank Iii From Burkholderia Cenocepacia Complexed With Pantothenate, Imidodiphosphate, And Amp
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TYPE III PANTOTHENATE KINASE
    Chains: A, B
    EC Number: 2.7.1.33
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BUCEA.17924.A.ER1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: BUCEA.17924.A.ER1
    Gene: COAX, BCEJ2315_06870, BCAL0693
    Organism Scientific: BURKHOLDERIA CENOCEPACIA (STRAIN ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)
    Organism Taxid: 216591
    Strain: ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610
    Synonym: PANK-III,PANTOTHENIC ACID KINASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 11)

Asymmetric/Biological Unit (5, 11)
No.NameCountTypeFull Name
12PN2Ligand/IonIMIDODIPHOSPHORIC ACID
2AMP1Ligand/IonADENOSINE MONOPHOSPHATE
3EDO2Ligand/Ion1,2-ETHANEDIOL
4MSE4Mod. Amino AcidSELENOMETHIONINE
5PAU2Ligand/IonPANTOTHENOIC ACID

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:11 , ASN A:12 , SER A:13 , ARG A:14 , LYS A:16 , PHE A:127 , GLY A:128 , THR A:129 , HOH A:489 , HOH A:509binding site for residue 2PN A 301
2AC2SOFTWARETYR A:96 , GLN A:101 , LEU A:102 , GLY A:103 , ASP A:105 , ARG A:106 , HOH A:451 , HOH A:489 , GLN B:164 , LEU B:165 , THR B:189binding site for residue PAU A 302
3AC3SOFTWAREHIS A:34 , THR A:35 , ARG A:36 , HOH A:416 , HOH A:453binding site for residue EDO A 303
4AC4SOFTWARETHR A:81 , THR A:82 , ILE A:83 , ARG A:84 , ARG A:86 , GLN A:89 , ILE A:254binding site for residue AMP A 304
5AC5SOFTWAREGLY B:11 , ASN B:12 , SER B:13 , ARG B:14 , LYS B:16 , PHE B:127 , GLY B:128 , THR B:129 , HOH B:462 , HOH B:470binding site for residue 2PN B 301
6AC6SOFTWAREGLN A:164 , LEU A:165 , THR A:189 , ASN B:12 , TYR B:96 , GLN B:101 , GLY B:103 , ASP B:105 , ARG B:106 , HOH B:437binding site for residue PAU B 302
7AC7SOFTWAREILE B:83 , ARG B:84 , ARG B:86 , GLN B:89binding site for residue EDO B 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5B8H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5B8H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5B8H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5B8H)

(-) Exons   (0, 0)

(no "Exon" information available for 5B8H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee...eeeeeeee...eeeeeeeee.hhhh.............eeeeee..hhhhhhhhhhhhhhhh....eee.....ee..eee...hhhhhhhhhhhhhhhhhhhh...eeeeeee..eeeeeee....eeeeeeeeehhhhhhhhhhhhh......hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhh....ee..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b8h A   2 SEPHLLIDAGNSRIKWALADARRTLVDTGAFGHTRDGGADPDWSRLPRPRGAWISNVAGADVAARIDALLDARWPGLPRTTIRSRPAQCGVTNGYTTPEQLGSDRWAGLIGAHAAFPGEHLLIATFGTATTLEALRADGCFTGGLIAPGWALmmRALGTHTAQLPTLTTDIASGLLAGAQAEPFQVDTPRSLSAGCLYAQAGLIERAWRDLVAAWQAPVRLVLAGGAADDVARALTIAHTRHDTLILSGLALIAAD 257
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151  ||   161       171       181       191       201       211       221       231       241       251      
                                                                                                                                                                                  154-MSE                                                                                                   
                                                                                                                                                                                   155-MSE                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...eeeeeee.....eeeeeeee.hhhh.............eeeeee..hhhhhhhhhhhhhhhh....eee.....ee..eee...hhhhhhhhhhhhhhhhhhhh...eeeeeee..eeeeeee....eeeeeeeeehhhhhhhhhhhh.......hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..hhhhhhh......ee..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b8h B   4 PHLLIDAGNSRIKWALADARRTLVDTGAFGHTRDGGADPDWSRLPRPRGAWISNVAGADVAARIDALLDARWPGLPRTTIRSRPAQCGVTNGYTTPEQLGSDRWAGLIGAHAAFPGEHLLIATFGTATTLEALRADGCFTGGLIAPGWALmmRALGTHTAQLPTLTTDIASGLLAGAQEPFQVDTPRSLSAGCLYAQAGLIERAWRDLVAAWQAPVRLVLAGGAADDVARALTIAHTRHDTLILSGLALIAAD 257
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153||     163       173       184       194       204       214       224       234       244       254   
                                                                                                                                                                                154-MSE                    181|                                                                          
                                                                                                                                                                                 155-MSE                    183
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5B8H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5B8H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5B8H)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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