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(-) Description

Title :  CRYSTAL STRUCTURE OF AN APRT FROM YERSINIA PSEUDOTUBERCULOSIS IN COMPLEX WITH AMP.
 
Authors :  G. C. Pavithra, U. A. Ramagopal
Date :  27 May 16  (Deposition) - 31 May 17  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Adenine Phosphoribosyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. C. Pavithra, U. A. Ramagopal
Crystal Structure Of An Aprt From Yersinia Pseudotuberculosis In Complex With Amp.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ADENINE PHOSPHORIBOSYLTRANSFERASE
    Chains: A
    EC Number: 2.4.2.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: LIC-PET30A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 7-187
    Gene: APT, YPTB0991
    Organism Scientific: YERSINIA PSEUDOTUBERCULOSIS SEROTYPE I (STRAIN IP32953)
    Organism Taxid: 273123
    Other Details: AMP COMPLEX
    Strain: IP32953
    Synonym: APRT

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1AMP1Ligand/IonADENOSINE MONOPHOSPHATE
2CL1Ligand/IonCHLORIDE ION
3NA2Ligand/IonSODIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1AMP2Ligand/IonADENOSINE MONOPHOSPHATE
2CL-1Ligand/IonCHLORIDE ION
3NA-1Ligand/IonSODIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:31 , PHE A:32 , ARG A:33 , ARG A:70 , ASP A:130 , ASP A:131 , LEU A:132 , ALA A:134 , THR A:135 , GLY A:136 , GLY A:137 , THR A:138 , LEU A:162 , NA A:502 , HOH A:603 , HOH A:605 , HOH A:618 , HOH A:631binding site for residue AMP A 501
2AC2SOFTWAREASP A:130 , ASP A:131 , AMP A:501 , HOH A:628 , HOH A:631 , HOH A:635binding site for residue NA A 502
3AC3SOFTWARETHR A:117 , ILE A:120 , HOH A:606 , HOH A:636binding site for residue NA A 503
4AC4SOFTWAREILE A:100 , SER A:101 , ARG A:148binding site for residue CL A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5B6H)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Tyr A:25 -Pro A:26
2Glu A:68 -Ala A:69

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5B6H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5B6H)

(-) Exons   (0, 0)

(no "Exon" information available for 5B6H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:179
                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhheeee.......eeeehhhhhhhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhhh.eeeee.........eeeeeee....eeeeeee.hhh....eeeeeeeee..hhhhhhhhhhhhhh..eeeeeeeeee.hhhhhhhhhhh...eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b6h A   7 KTAQQLKYIKDSIKTIPDYPKAGILFRDVTSLLENPKAYSASIELLSEHYSESGVTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETISESYELEYGTDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVVHAAFIINLPELGGEARLTQQGIHCYSLVSFD 185
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5B6H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5B6H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5B6H)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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  5b6h
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  APT_YERPS | Q66DQ2
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 Related Entries

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UniProtKB/Swiss-Prot
        APT_YERPS | Q66DQ2: 4mb6

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