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(-) Description

Title :  THE CRYSTAL STRUCTURE OF ANTI-H4K20ME1_SCFV, 15F11
 
Authors :  T. Kujirai, N. Horikoshi, H. Kurumizaka
Date :  04 Mar 16  (Deposition) - 21 Sep 16  (Release) - 05 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.94
Chains :  Asym./Biol. Unit :  A
Keywords :  Histone Modification, Scfv, Intrabody, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Sato, T. Kujirai, R. Arai, H. Asakawa, C. Ohtsuki, N. Horikoshi, K. Yamagata, J. Ueda, T. Nagase, T. Haraguchi, Y. Hiraoka, A. Kimura, H. Kurumizaka, H. Kimura
A Genetically Encoded Probe For Live-Cell Imaging Of H4K20 Monomethylation
J. Mol. Biol. V. 428 3885 2016
PubMed-ID: 27534817  |  Reference-DOI: 10.1016/J.JMB.2016.08.010

(-) Compounds

Molecule 1 - ANTI-H4K20ME1_SCFV
    Chains: A
    Engineered: YES
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5B3N)

(-) Sites  (0, 0)

(no "Site" information available for 5B3N)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:24 -A:98
2A:161 -A:230

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ser A:145 -Pro A:146
2His A:218 -Pro A:219
3Asp A:236 -Pro A:237

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5B3N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5B3N)

(-) Exons   (0, 0)

(no "Exon" information available for 5B3N)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eee.....eeeeeeee..hhhhh.eeeeee.....eeeeeee......ee........eeeeee....eeeeee...hhhhheeeeeeee........eeee...eeeee.....eeee..eeee.....eeeeeee....ee..ee.eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b3n A   3 EVKLVESGGGLVKPGGSLKLSCAASGFTFSSYAMSWVRQTPEKRLEWVATISSGGSYTYYPNTVKGRFTISRDNAKNTLYLQMSSLRSEDTAIYYCARHGVRHRVDYFDYWGQGTTLTVSSDIVLTQSPASLTVSLGQRATISCKASQSVDYDGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSGSGTDFTLNIHPVEEEDAATYYCQQSNEDPLTFGAGTKLEIK 249
                                    12        22        32        42        52        62        72        82        92       102       112       122|      147       157       167       177       187       197       207       217       227       237       247  
                                                                                                                                                 122|                                                                                                               
                                                                                                                                                  138
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5B3N)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5B3N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5B3N)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5B3N)

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  Cis Peptide Bonds
    Asp A:236 - Pro A:237   [ RasMol ]  
    His A:218 - Pro A:219   [ RasMol ]  
    Ser A:145 - Pro A:146   [ RasMol ]  
 

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 Related Entries

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