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(-) Description

Title :  CRYSTAL STRUCTURE OF RUMINOCOCCUS ALBUS 4-O-BETA-D-MANNOSYL-D-GLUCOSE PHOSPHORYLASE (RAMP1)
 
Authors :  Y. Ye, W. Saburi, K. Kato, M. Yao
Date :  11 Aug 15  (Deposition) - 23 Mar 16  (Release) - 06 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Glycoside Hydrolase Family 130, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Ye, W. Saburi, R. Odaka, K. Kato, N. Sakurai, K. Komoda, M. Nishimoto M. Kitaoka, H. Mori, M. Yao
Structural Insights Into The Difference In Substrate Recognition Of Two Mannoside Phosphorylases From Two Gh130 Subfamilies
Febs Lett. V. 590 828 2016
PubMed-ID: 26913570  |  Reference-DOI: 10.1002/1873-3468.12105

(-) Compounds

Molecule 1 - 4-O-BETA-D-MANNOSYL-D-GLUCOSE PHOSPHORYLASE
    Chains: A
    EC Number: 2.4.1.281
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RUMAL_0852
    Organism Scientific: RUMINOCOCCUS ALBUS (STRAIN ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7)
    Organism Taxid: 697329
    Strain: ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7
    Synonym: MANNOSYLGLUCOSE PHOSPHORYLASE,RAMP1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5AY9)

(-) Sites  (0, 0)

(no "Site" information available for 5AY9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AY9)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:210 -Phe A:211
2Ser A:216 -Gly A:217

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AY9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AY9)

(-) Exons   (0, 0)

(no "Exon" information available for 5AY9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:386
                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh..............ee...........hhhhh................eeeeeeeeeeee..eeeeeeeeee....eeeeeeee.......ee.............eeeeeeeeeee.....eeeeeeeeee........eeeeeeeeee......ee....ee....eeeeeeeeeee....eeeeeeee..........eeeeeee......ee...eeeee.........eee.....ee....eeeeeeeeeee..eeeeeeeeeee.......eee.........hhhhhh......eeeeeeee....eeeeeeee...ee..eeeehhhhhhhhhh......hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ay9 A   1 MIHEKYTEMRNEQEALLSRKNTKTSFYNGIYDRYEHPVLTREHIPLHWRYDLNKETNPFFQERLGINAVFNAGAIKLNDRYCLVARVEGNDRKSFFAVAESDKGTEGFRFRQYPVCLPALTDDETNVYDMRLTQHEDGWIYGVFCVEKSAGTADLSEAVASAGIARTKDLTNWERLPDLVTLRSPQQRNVTLLPEFVDGKYAFYTRPMDGFIETGSGGGIGFGLADDITHAVIDEERMTSIRRYHTITESKNGAGATPIKTERGWLNIAHGVRNTAAGLRYVIYCFVTDLSEPWKVIAEPGGYLIAPFKDERVGDVSNVVFTNGAIVDDNGDVYIYYASSDTRLHVAVSSIDKLLDYAFNTPADALRTAECVKQRCDLIKRNIELL 386
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AY9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AY9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AY9)

(-) Gene Ontology  (5, 5)

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  Cis Peptide Bonds
    Gly A:210 - Phe A:211   [ RasMol ]  
    Ser A:216 - Gly A:217   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MGP_RUMA7 | E6UIS7: 5ayc

(-) Related Entries Specified in the PDB File

5ayc 5ayd 5aye