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(-) Description

Title :  CRYSTAL STRUCTURE ANALYSIS OF DNA DUPLEXES CONTAINING SULFOAMIDE-BRIDGED NUCLEIC ACID (SUNA-NME)
 
Authors :  Y. Mitsuoka, H. Aoyama, A. Kugimiya, Y. Fujimura, T. Yamamoto, R. Waki, S. Tahara, M. Sawamura, M. Noda, Y. Hari, S. Obika
Date :  28 Jul 15  (Deposition) - 20 Jul 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.13
Chains :  Asym./Biol. Unit :  A,B
Keywords :  A-Form Dna, Sulfonamide-Bridged Nucleic Acid, Suna[Nme], Antisense, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Mitsuoka, H. Aoyama, A. Kugimiya, Y. Fujimura, T. Yamamoto, R. Waki F. Wada, S. Tahara, M. Sawamura, M. Noda, Y. Hari, S. Obika
Effect Of An N-Substituent In Sulfonamide-Bridged Nucleic Acid (Suna) On Hybridization Ability And Duplex Structure.
Org. Biomol. Chem. V. 14 6531 2016
PubMed-ID: 27296230  |  Reference-DOI: 10.1039/C6OB01051B

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*CP*GP*TP*AP*(LSM)P*AP*CP*GP*C)-3')
    Chains: A, B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1LST2Mod. Nucleotide[(1R,5R,7R,8S)-2-METHYL-7-[5-METHYL-2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-8-OXIDANYL-3,3-BIS(OXIDANYLIDENE)-6-OXA-3$L^{6}-THIA-2-AZABICYCLO[3.2.1]OCTAN-5-YL]METHYL DIHYDROGENPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 5AXF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AXF)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:10
                                         
                  5axf A  1 GCGTAxACGC 10
                                 |  10
                                 6-LST


Chain B from PDB  Type:DNA  Length:10
                                         
                  5axf B 11 GCGTAxACGC 20
                                 |  20
                                16-LST
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AXF)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

5axe