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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SGIP1 MU HOMOLOGY DOMAIN IN THE P4212 SPACE GROUP
 
Authors :  A. Shimada, A. Yamaguchi, D. Kohda
Date :  08 Jul 15  (Deposition) - 06 Jul 16  (Release) - 06 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Endocytosis, Protein-Protein Interaction (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Shimada, A. Yamaguchi, D. Kohda
Structural Basis For The Recognition Of Two Consecutive Mutually Interacting Dpf Motifs By The Sgip1 Mu Homology Domain.
Sci Rep V. 6 19565 2016
PubMed-ID: 26822536  |  Reference-DOI: 10.1038/SREP19565

(-) Compounds

Molecule 1 - SH3-CONTAINING GRB2-LIKE PROTEIN 3-INTERACTING PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 552-828
    Gene: SGIP1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ENDOPHILIN-3-INTERACTING PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2ZN4Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:589 , ASP A:672 , HOH A:1033binding site for residue ZN A 901
2AC2SOFTWAREASP A:558 , HIS A:601 , GLU A:748 , HOH A:1001binding site for residue ZN A 902
3AC3SOFTWAREPRO A:650 , HIS A:655 , LYS A:658 , HOH A:1016 , HOH A:1030 , HOH A:1031binding site for residue ZN A 903
4AC4SOFTWAREHIS A:623 , HOH A:1027binding site for residue ZN A 904

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:632 -A:633

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:740 -Pro A:741

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AWR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AWR)

(-) Exons   (0, 0)

(no "Exon" information available for 5AWR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeeeeeeee..hhhhheeeeeeeeeeeee.hhhhhhhh.......eeeee....eeeeee..........eeeee.hhhhhhhhhhhhhh......eeeeeeeeeee..hhhhhh.eeeeeeeeee..eeeeeeeeee.hhhh.....eeeeeeeee....eeeeeeee...eee....eeeeeeeee...hhhh.eeeeeeeeee.........eeeeeeee.......eeeee...eeeeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5awr A 557 QDTLPVAAAFTETVNAYFKGADPSKCIVKITGEmVLSFPAGITRHFANNPSPAALTFRVINFSRLEHVLPNPQLLCCDANTKEFWVNmPNLmTHLKKVSEQKPQATYYNVDmLKYQVSAQGIQSTPLNLAVNWRCEPSSTDLRIDYKYNTDAmTTAVALNNVQFLVPIDGGVTKLQAVLPPAVWNAEQQRILWKIPDISQKSENGGVGSLLARFQLSEGPSKPSPLVVQFTSEGSTLSGCDIELVGAGYRFSLIKKRFAAGKYLADN 828
                                   566       576       586   |   596       606       616       626      |641       651 |     661       671 |     681       691       701       711  |    721       731       741       751       761       771       781       791       801       811       821       
                                                           590-MSE                                    633|       649-MSE                 673-MSE                                  714-MSE                                                                                                              
                                                                                                       639           653-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AWR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AWR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AWR)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu A:740 - Pro A:741   [ RasMol ]  
 

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  5awr
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  SGIP1_HUMAN | Q9BQI5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SGIP1_HUMAN | Q9BQI5: 5aws 5awt 5awu

(-) Related Entries Specified in the PDB File

5aws 5awt 5awu