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(-) Description

Title :  STRUCTURE OF THE SAM-DEPENDENT RRNA:ACP-TRANSFERASE TSR3 FROM S. SOLFATARICUS
 
Authors :  J. P. Wurm, C. Immer, D. Pogoryelov, B. Meyer, P. Koetter, K. -D. Entian, J. Woehnert
Date :  14 Sep 15  (Deposition) - 27 Apr 16  (Release) - 01 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Transferase, S-Adenosylmethionine Dependent 3-Amino-3-Carboxypropyl Transferase, Rrna, Pseudouridine, Sam, Spout-Fold (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. -D. Entian, C. Immer, P. Koetter, D. Lafontaine, M. Britter, D. Pogoryelov, S. Sharma, J. Wohnert, J. P. Wurm
Ribosome Biogenesis Factor Tsr3 Is The Aminocarboxypropyl Transferase Responsible For 18S Rrna Hypermodification In Yeast And Humans
Nucleic Acids Res. V. 44 4304 2016
PubMed-ID: 27084949  |  Reference-DOI: 10.1093/NAR/GKW244

(-) Compounds

Molecule 1 - TSR3
    Atcc: 35092
    Chains: A, B, C
    EC Number: 2.5.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET11
    Expression System Vector Type: PLASMID
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5AP8)

(-) Sites  (0, 0)

(no "Site" information available for 5AP8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AP8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AP8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AP8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AP8)

(-) Exons   (0, 0)

(no "Exon" information available for 5AP8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..hhhhhhh..eee......eee...........hhhhhhhh.eeee.......hhhhh.....eee...................hhhhhhhhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ap8 A   1 MKVYIIDYGKKLVKLKIAEFTRVGKGVVLDPFAQITLSNKDKDIVRRIGITIVDTSWNNTSQSEFKNIRGEHRRIPILFAGNPIHYGIAYKLSSIEALIATLYIVDEVEEAIKLSNVVKWGHTFIELNKELLEAYKNKTEEDIKKIEREII 160
                                   |19        29        39        49        59        69        79        89        99       109       119       129       139       149       159 
                                   8|                                                                                                                                              
                                   18                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......hhhhhhh..eeee.....eee........hhhhhhhhhhh.eee....hhhhh.....eee...................hhhhhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ap8 B   1 MKVYIIDYHKCTGKKLVKLKIAEFTRVGKGVVLDPFAQITLSNKDKDIVRRIGITIVDTTSQSEFKNIRGEHRRIPILFAGNPIHYGIAYKLSSIEALIATLYIVDEVEEAIKLSNVVKWGHTFIELNKELLEAYKNKTEEDIKKIEREIIEKILEK 166
                                    10|       25        35        45        55        69        79        89        99       109       119       129       139       149       159       
                                    10|                                              64|                                                                                                 
                                     16                                               69                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee..hhhhh....eee.....eee........hhhhhhhhhhh.eeee.......hhhhhh....eee...................hhhhhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ap8 C   1 MKVYIIDGKKLVKLKIAEFTRVGKGVVLDPFAQITLSNKDKDIVRRIGITIVDTSWNNTSQSEFKNIRGEHRRIPILFAGNPIHYGIAYKLSSIEALIATLYIVDEVEEAIKLSNVVKWGHTFIELNKELLEAYKNKTEEDIKKIEREIIEKILEK 166
                                  ||20        30        40        50        60        70        80        90       100       110       120       130       140       150       160      
                                  7|                                                                                                                                                    
                                  18
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AP8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AP8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AP8)

(-) Gene Ontology  (4, 4)

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(-) Related Entries Specified in the PDB File

5apg STRUCTURE OF THE SAM-DEPENDENT RRNA:ACP-TRANSFERASE TSR3 FROM VULCANISAETA DISTRIBUTA