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(-) Description

Title :  ENDO180 D1-4, TRIGONAL FORM
 
Authors :  P. Paracuellos, D. C. Briggs, F. Carafoli, T. Loncar, E. Hohenester
Date :  09 Sep 15  (Deposition) - 28 Oct 15  (Release) - 18 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.36
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Endocytosis, Endocytic Receptor, Fibronectin Type Ii Domain, C-Type Lectin Domain, Collagen, Gelatin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Paracuellos, D. C. Briggs, F. Carafoli, T. Loncar, E. Hohenester
Insights Into Collagen Uptake By C-Type Mannose Receptors From The Crystal Structure Of Endo180 Domains 1-4.
Structure V. 23 2133 2015
PubMed-ID: 26481812  |  Reference-DOI: 10.1016/J.STR.2015.09.004

(-) Compounds

Molecule 1 - C-TYPE MANNOSE RECEPTOR 2
    Chains: A, B
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Plasmid: PCEP-PU
    Expression System Taxid: 9606
    Fragment: DOMAINS 1-4, UNP RESIDUES 35-511
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: C-TYPE LECTIN DOMAIN FAMILY 13 MEMBER E, ENDOCYTIC RECEPTOR 180, MACROPHAGE MANNOSE RECEPTOR 2, UROKINASE-TYPE PLASMINOGEN ACTIVATOR RECEPTOR-ASSOCIATED PROTEIN, UPAR-ASSOCIATED PROTEIN, UROKINASE RECEPTOR-ASSOCIATED PROTEIN, C-TYPE LECTIN DOMAIN FAMILY 13 MEMBER E, ENDOCYTIC RECEPTOR 180, MACROPHAGE MANNOSE RECEPTOR 2, UROKINASE-TYPE PLASMINOGEN ACTIVATOR RECEPTOR-ASSOCIATED PROTEIN, UPAR-ASSOCIATED PROTEIN, UROKINASE RECEPTOR-ASSOCIATED PROTEIN, CD2 80

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5AO6)

(-) Sites  (0, 0)

(no "Site" information available for 5AO6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AO6)

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1Ile A:189 -Pro A:190
2Asn A:286 -Gly A:287
3Gln A:326 -Pro A:327
4Glu A:470 -Pro A:471
5Ile B:189 -Pro B:190
6Asn B:286 -Gly B:287
7Gly B:308 -Trp B:309
8Gln B:326 -Pro B:327
9Glu B:470 -Pro B:471

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AO6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AO6)

(-) Exons   (0, 0)

(no "Exon" information available for 5AO6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:430
                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee....eeeeee..eeeee......hhhh.eeee...eeee....eeee......eee...........hhhhhhhhhhhhhh.....eee..............................eee..eee.............eee...hhhhhh.eee............ee......eeeeeeeeeehhhhhhhhhhh...ee....hhhhhhhhh........eeeeeee........ee.......................eeeee......eeee.....eeeeeee..........eee..eeeeeeeeeehhhhhhhhhhh...ee....hhhhhhhhhhh......eeeeeeeeeee..eeee........................eeeeee.....eeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ao6 A  40 EPNVFLIFSHGLQGCLEAQGGQVRVTPACNTSLPAQRWKWVSRNRLFNLGTMQCLGTGWASLGMYECDREALNLRWHCRTLGDQLSLLLGARSGQWRIYGSEEDLCALPYHEVYTIQGNSHGKPCTIPFKYDNQWFHGCTSTGREDGHLWCATTQDYGKDERWGFCPIKSNDCETFWDKDQLTDSCYQFNFQSTLSWREAWASCEQQGADLLSITEIHEQTYINGLLTGYSSTLWIGLNDLDTSGGWQWSDNSPLKYLNWESDQPDNPSEENCGVIRTESSGGWQNRDCSIALPYVCKKKPNVECEPSWQPFQGHCYRLQAEKRSWQESKKACLRGGGDLVSIHSMAELEFITKQIKQEVEELWIGLNDLKLQMNFEWSDGSLVSFTHWHPFEPNNFRDSLEDCVTIWGPEGRWNDSPCNQSLPSICKKA 507
                                    49        59        69        79        89       105       115       125       135 ||    162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362 ||    387       397       407       417       427       437       447       457       467       477       487       497       507
                                                                                     98|                             137|                                                                                                                                                                                                              364|                                                                                                                               
                                                                                     105                              155                                                                                                                                                                                                               380                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:436
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.eee....eeeeee..eeeee......hhhh.eeeehhheeee....eeee.....eee...........hhhhhhhhhhhhhh....eee..............................eee..eee.............eee...hhhhhh.eee............ee......eeeeeeeeeehhhhhhhhhhh...ee....hhhhhhhhhh.......eeeeeee........ee.......................eeeee......eeee.....eeeeeee..............eee..eeeeeeeeeehhhhhhhhhhhh..ee....hhhhhhhhhhh......eeeeeeeeeee..eeee.................hhhhhh.eeeeee....eeeeee....eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ao6 B  40 EPNVFLIFSHGLQGCLEAQGGQVRVTPACNTSLPAQRWKWVSRNRLFNLGTMQCLGTGWSLGMYECDREALNLRWHCRTLGDQLSLLLGASGQWRIYGSEEDLCALPYHEVYTIQGNSHGKPCTIPFKYDNQWFHGCTSTGREDGHLWCATTQDYGKDERWGFCPIKSNDCETFWDKDQLTDSCYQFNFQSTLSWREAWASCEQQGADLLSITEIHEQTYINGLLTGYSSTLWIGLNDLDTSGGWQWSDNSPLKYLNWESDQPDNPSEENCGVIRTESSGGWQNRDCSIALPYVCKKKPNANVKVECEPSWQPFQGHCYRLQAEKRSWQESKKACLRGGGDLVSIHSMAELEFITKQIKQEVEELWIGLNDLKLQMNFEWSDGSLVSFTHWHPFEPNNFRDSLEDCVTIWGPEGRWNDSPCNQSLPSICKKAGQLS 511
                                    49        59        69        79        89       106       116       126       136|      164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364|      385       395       405       415       425       435       445       455       465       475       485       495       505      
                                                                                     98|                           136|                                                                                                                                                                                                              364|                                                                                                                                       
                                                                                     106                            155                                                                                                                                                                                                               376
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AO6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AO6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AO6)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:286 - Gly A:287   [ RasMol ]  
    Asn B:286 - Gly B:287   [ RasMol ]  
    Gln A:326 - Pro A:327   [ RasMol ]  
    Gln B:326 - Pro B:327   [ RasMol ]  
    Glu A:470 - Pro A:471   [ RasMol ]  
    Glu B:470 - Pro B:471   [ RasMol ]  
    Gly B:308 - Trp B:309   [ RasMol ]  
    Ile A:189 - Pro A:190   [ RasMol ]  
    Ile B:189 - Pro B:190   [ RasMol ]  
 
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 Related Entries

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UniProtKB/Swiss-Prot
        MRC2_HUMAN | Q9UBG0: 5ao5 5e4k 5e4l 5ew6

(-) Related Entries Specified in the PDB File

5ao5 ENDO180 D1-4, MONOCLINIC FORM