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(-) Description

Title :  STRUCTURE OF AN SGT1-SKP1 COMPLEX
 
Authors :  O. Willhoft, C. K. Vaughan
Date :  03 Sep 15  (Deposition) - 08 Feb 17  (Release) - 15 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.82
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D  (1x)
Keywords :  Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Willhoft, R. Kerr, D. Patel, W. Zhang, C. Al-Jassar, T. Daviter, S. H. Millson, K. Thalassinos, C. K. Vaughan
The Crystal Structure Of The Sgt1-Skp1 Complex: The Link Between Hsp90 And Both Scf E3 Ubiquitin Ligases And Kinetochores.
Sci Rep V. 7 41626 2017
PubMed-ID: 28139700  |  Reference-DOI: 10.1038/SREP41626

(-) Compounds

Molecule 1 - SGT1
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: T7 EXPRESS LYSY/IQ
    Expression System Vector: PRSET A
    Expression System Vector Type: PLASMID
    Fragment: TPR DOMAIN, UNP RESIDUES 1-150
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: SUPPRESSOR OF G2 ALLELE OF SKP1
 
Molecule 2 - SUPPRESSOR OF KINETOCHORE PROTEIN 1
    Chains: D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Variant: T7 EXPRESS LYSY/IQ
    Expression System Vector: PRSET A
    Expression System Vector Type: PLASMID
    Fragment: BTBPOZ DOMAIN, UNP RESIDUES 1-35,65-158
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: CENTROMERE DNA-BINDING PROTEIN COMPLEX CBF3 SUBUNIT D, E3 UBIQUITIN LIGASE COMPLEX SCF SUBUNIT SKP1, SKP1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABC 
Biological Unit 2 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5AN3)

(-) Sites  (0, 0)

(no "Site" information available for 5AN3)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AN3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AN3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AN3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AN3)

(-) Exons   (0, 0)

(no "Exon" information available for 5AN3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5an3 A   3 VEKDLKTAYKALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLGYVDDTLPLWEDRLETK 134
                                    12        22        32        42        52        62        72       |84        94       104       114       124       134
                                                                                                        80|                                                   
                                                                                                         83                                                   


Chain B from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5an3 B   2 PVEKDLKTAYKALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLGYVDDTLPLWEDRLETKLNK 137
                                    11        21        31        41        51        61        71        81        91       101       111       121       131      


Chain C from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5an3 C   2 PVEKDLKTAYKALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLGYVDDTLPLWEDRLETKLN 136
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     


Chain D from PDB  Type:PROTEIN  Length:104
                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.....eeeeehhhhh.hhhhhhhhh....eee....hhhhhhhhhhhhhhh....hhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 5an3 D   3 TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDAEIVMPVPNVRSSVLQKVIEWAEHHRDSVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMI 158
                                    12        22        32   ||   79        89        99||     124       134       144       154    
                                                            36|                       100|                                          
                                                             74                        116
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AN3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AN3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AN3)

(-) Gene Ontology  (34, 37)

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  SGT1_YEAST | Q08446
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  SKP1_YEAST | P52286
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SKP1_YEAST | P52286: 1nex 3mks 3v7d

(-) Related Entries Specified in the PDB File

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