5AIZ - JenaLib

Title :   THE PIAS-LIKE COACTIVATOR ZMIZ1 IS A DIRECT AND SELECTIVE COFACTOR OF NOTCH1 IN T-CELL DEVELOPMENT AND LEUKEMIA

Authors :   H. J. Cho, M. Murai, M. Chiang, T. Cierpicki

Date :   18 Feb 15 (Deposition) - 28 Oct 15 (Release) - 02 Dec 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)

Keywords :   Zinc-Binding Protein, Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. J. Cho, M. Chiang, T. Cierpicki
The Pias-Like Coactivator Zmiz1 Is A Direct And Selective Cofactor Of Notch1 In T-Cell Development And Leukemia
Immunity V. 43 870 2015
PubMed-ID: 26522984 | Reference-DOI: 10.1016/J.IMMUNI.2015.10.007

Compounds

Molecule 1 - ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 1
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	MODIFIED PET32A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	ROSETTA2
	Expression System Vector Type	:	PLASMID
	Fragment	:	TPR DOMAIN, UNP RESIDUES 1-118
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PIAS-LIKE PROTEIN ZIMP10, RETINOIC ACID-INDUCED PROTEIN 17, ZMIZ1 N-TERMINAL DOMAIN

Structural Features

Chains, Units

		1
Asymmetric Unit	:	A
Biological Unit 1 (1x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (4, 5)

Asymmetric Unit (4, 5)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
4	UNX	1	Ligand/Ion	UNKNOWN ATOM OR ION

Biological Unit 1 (4, 5)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
4	UNX	1	Ligand/Ion	UNKNOWN ATOM OR ION

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:14 , GLU A:34 , SER A:61 , ARG A:62 , ALA A:65 , LEU A:103	BINDING SITE FOR RESIDUE EDO A1113
2	AC2	SOFTWARE	HIS A:29 , ARG A:62 , HOH A:2065 , HOH A:2131	BINDING SITE FOR RESIDUE ACT A1114

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:110
                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 5aiz A   3 SmDRHIQQTNDRLQCIKQHLQNPANFHNAATELLDWCGDPRAFQRPFEQSLmGCLTVVSRVAAQQGFDLDLGYRLLAVCAANRDKFTPKSAALLSSWCEELGRLLLLRHQ 112
                             |      12        22        32        42        52 |      62        72        82        92       102       112
                             |                                                54-MSE                                                      
                             4-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (18, 18)

Visualization

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Asymmetric Unit
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	Ligands, Modified Residues, Ions
		ACT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		EDO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MSE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		UNX	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 5aiz)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

Still Images

Jmol
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	5aiz
		Family and Domain Information	:	ProDom \| SYSTERS
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	ZMIZ1_HUMAN \| Q9ULJ6
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Description