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(-) Description

Title :  HUMAN PARP9 2ND MACRODOMAIN
 
Authors :  C. Sieg, L. Shrestha, R. Talon, F. Sorrell, E. Williams, F. Von Delft, C C. Arrowsmith, A. M. Edwards, S. Knapp, J. M. Elkins
Date :  15 Feb 15  (Deposition) - 25 Feb 15  (Release) - 25 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Elkins
Structure Of Parp9 2Nd Macrodomain
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - POLY [ADP-RIBOSE] POLYMERASE 9
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC28-BSA4
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: 2ND MACRODOMAIN, UNP RESIDUES 310-493
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PARP-9, ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 9, ARTD9, B AGGRESSIVE LYMPHOMA PROTEIN, PARP9

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
115P3Ligand/IonPOLYETHYLENE GLYCOL (N=34)
2EDO6Ligand/Ion1,2-ETHANEDIOL
3PO43Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
115P2Ligand/IonPOLYETHYLENE GLYCOL (N=34)
2EDO2Ligand/Ion1,2-ETHANEDIOL
3PO41Ligand/IonPHOSPHATE ION
Biological Unit 2 (3, 7)
No.NameCountTypeFull Name
115P1Ligand/IonPOLYETHYLENE GLYCOL (N=34)
2EDO4Ligand/Ion1,2-ETHANEDIOL
3PO42Ligand/IonPHOSPHATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:388 , GLN A:426 , LEU A:427 , THR A:428 , HOH A:2014BINDING SITE FOR RESIDUE EDO A1457
02AC2SOFTWARETHR B:388 , GLN B:426 , LEU B:427 , THR B:428 , HOH B:2007BINDING SITE FOR RESIDUE EDO B1459
03AC3SOFTWARESER B:302 , VAL B:313 , ALA B:394 , LEU B:395 , GLY B:396 , THR B:397 , HOH B:2115BINDING SITE FOR RESIDUE EDO B1460
04AC4SOFTWARELYS B:335 , LYS B:404 , GLU B:405BINDING SITE FOR RESIDUE EDO B1461
05AC5SOFTWARETHR B:295 , LYS B:430 , HOH B:2111BINDING SITE FOR RESIDUE EDO B1462
06AC6SOFTWARELYS A:403 , LYS A:404 , GLU A:405BINDING SITE FOR RESIDUE EDO A1458
07AC7SOFTWAREASP A:297 , LYS A:354 , TYR A:355 , SER A:363 , GLU A:364 , GLN A:385 , ASN A:386 , 15P A:1460 , HOH A:2142BINDING SITE FOR RESIDUE 15P A1459
08AC8SOFTWAREASP B:297 , LYS B:354 , TYR B:355 , SER B:363 , GLU B:364 , GLN B:385 , ASN B:386 , GLU B:401 , HOH B:2080 , HOH B:2126BINDING SITE FOR RESIDUE 15P B1463
09AC9SOFTWARELEU A:351 , 15P A:1459 , HOH A:2197 , HOH A:2199BINDING SITE FOR RESIDUE 15P A1460
10BC1SOFTWAREHIS A:306 , LYS A:333 , LYS A:424 , HOH A:2168 , HOH A:2201BINDING SITE FOR RESIDUE PO4 A1461
11BC2SOFTWAREHIS B:306 , LYS B:333 , LYS B:424 , HOH B:2175BINDING SITE FOR RESIDUE PO4 B1464
12BC3SOFTWARELYS A:453 , GLN B:369 , HIS B:373BINDING SITE FOR RESIDUE PO4 B1465

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AIL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AIL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AIL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AIL)

(-) Exons   (0, 0)

(no "Exon" information available for 5AIL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee..eeeeeee.hhhhh...eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.......eeeeee.....hhhhhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ail A 273 SMNAMVVNNLTLQIVQGHIEWQTADVIVNSVNPHDITVGPVAKSILQQAGVEMKSEFLATKAKQQLVLVTKGFNLFCKYIYHVLWHSEFPKPQILKHAMKECLEKCIEQNITSISFPALGTGNMEIKKETAAEILFDEVLTFAKDHVKHQLTVKFVIFPTDLEIYKAFSSEMAKRSKMLS 456
                                   282       292       302       312       322       332   ||  346       356       366       376       386       396       406       416       426       436       446       456
                                                                                         336|                                                                                                                   
                                                                                          341                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:182
                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeeeee.hhhhh...eeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.......eeeeee.....hhhhhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ail B 273 SMNAMVVNNLTLQIVQGHIEWQTADVIVNSVNPHDITVGPVAKSILQQAGVEMKSEFLATKAKQQLVLVTKGFNLFCKYIYHVLWHSEFPKPQILKHAMKECLEKCIEQNITSISFPALGTGNMEIKKETAAEILFDEVLTFAKDHVKHQLTVKFVIFPTDLEIYKAFSSEMAKRSKMLSLN 458
                                   282       292       302       312       322       332   ||  346       356       366       376       386       396       406       416       426       436       446       456  
                                                                                         336|                                                                                                                     
                                                                                          341
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AIL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AIL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AIL)

(-) Gene Ontology  (14, 14)

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5aik HUMAN DYRK1A IN COMPLEX WITH LDN-211898