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(-) Description

Title :  DISCOVERY AND CHARACTERIZATION OF THERMOPHILIC LIMONENE-1,2-EPOXIDE HYDROLASES FROM HOT SPRING METAGENOMIC LIBRARIES. TOMSK-SAMPLE-NATIVE
 
Authors :  E. Ferrandi, C. Sayer, M. N. Isupov, C. Annovazzi, C. Marchesi, G. Iacob X. Peng, E. Bonch-Osmolovskaya, R. Wohlgemuth, J. A. Littlechild, D.
Date :  13 Feb 15  (Deposition) - 17 Jun 15  (Release) - 12 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.26
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. E. Ferrandi, C. Sayer, M. N. Isupov, C. Annovazzi, C. Marchesi, G. Iacobone, X. Peng, E. Bonch-Osmolovskaya, R. Wohlgemuth, J. A. Littlechild, D. Montia
Discovery And Characterization Of Thermophilic Limonene- 1, 2-Epoxide Hydrolases From Hot Spring Metagenomic Libraries
Febs J. V. 282 2879 2015
PubMed-ID: 26032250  |  Reference-DOI: 10.1111/FEBS.13328

(-) Compounds

Molecule 1 - LIMONENE-1,2-EPOXIDE HYDROLASE
    Chains: A, B
    EC Number: 3.3.2.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRHAM
    Expression System Strain: 10G
    Expression System Taxid: 562
    Organism Scientific: UNIDENTIFIED
    Organism Taxid: 32644

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1IMD4Ligand/IonIMIDAZOLE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:34 , ASP A:80 , ASP A:111 , PHE A:113 , HOH A:2264BINDING SITE FOR RESIDUE IMD A 200
2AC2SOFTWAREHIS A:65 , GLU A:77 , HOH A:2205 , HOH A:2266 , ARG B:110BINDING SITE FOR RESIDUE IMD A 201
3AC3SOFTWAREASN B:34 , ASP B:80 , ASP B:111 , PHE B:113BINDING SITE FOR RESIDUE IMD B 200
4AC4SOFTWAREHIS B:65 , GLU B:77 , HOH B:2181BINDING SITE FOR RESIDUE IMD B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AIF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AIF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AIF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AIF)

(-) Exons   (0, 0)

(no "Exon" information available for 5AIF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhheeeeeeeee.....eehhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.....eeeeeee.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 5aif A   1 MTPIETVTAFIAHWNSGDMEAMYDLCAEDVVWHNIPMEPIAGKPAMRAAVEGFMANVSQCDWQVHAIAANGATVLTERTDGFTFTNGRRATIRVMGTFECDAERRIIAWRDYFDMLEFQREFAG 124
                                    10        20        30        40        50        60        70        80        90       100       110       120    


Chain B from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhheeeeeeeee.....eehhhhhhhhhhhhh..eeeeeeeeeeeeee..eeeeeeeeeeee....eeeeeeeeeeee.....eeeeeee.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 5aif B   1 MTPIETVTAFIAHWNSGDMEAMYDLCAEDVVWHNIPMEPIAGKPAMRAAVEGFMANVSQCDWQVHAIAANGATVLTERTDGFTFTNGRRATIRVMGTFECDAERRIIAWRDYFDMLEFQREFAG 124
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AIF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AIF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AIF)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5AIF)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

5aig DISCOVERY AND CHARACTERIZATION OF THERMOPHILIC LIMONENE-1 ,2-EPOXIDE HYDROLASES FROM HOT SPRING METAGENOMIC LIBRARIES. TOMSK-SAMPLE-VALPROMIDE COMPLEX
5aih DISCOVERY AND CHARACTERIZATION OF THERMOPHILIC LIMONENE-1 ,2-EPOXIDE HYDROLASES FROM HOT SPRING METAGENOMIC LIBRARIES. CH55-SAMPLE-NATIVE
5aii DISCOVERY AND CHARACTERIZATION OF THERMOPHILIC LIMONENE-1 ,2-EPOXIDE HYDROLASES FROM HOT SPRING METAGENOMIC LIBRARIES. CH55-SAMPLE-PEG COMPLEX