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(-) Description

Title :  CHORISMATASE MECHANISMS REVEAL FUNDAMENTALLY DIFFERENT TYPES OF REACTION IN A SINGLE CONSERVED PROTEIN FOLD
 
Authors :  F. Hubrich, P. Juneja, M. Mueller, K. Diederichs, W. Welte, J. N. Andexe
Date :  28 Jan 15  (Deposition) - 19 Aug 15  (Release) - 16 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Oxidoreductase, Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Hubrich, P. Juneja, M. Mueller, K. Diederichs, W. Welte, J. N. Andexer
Chorismatase Mechanisms Reveal Fundamentally Different Types Of Reaction In A Single Conserved Protein Fold.
J. Am. Chem. Soc. V. 137 11032 2015
PubMed-ID: 26247872  |  Reference-DOI: 10.1021/JACS.5B05559

(-) Compounds

Molecule 1 - PUTATIVE PTERIDINE-DEPENDENT DIOXYGENASE
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: RP-PL1SL2
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOMYCES HYGROSCOPICUS
    Organism Taxid: 1912
    Synonym: HYG5-CHORISMATASE

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric Unit (3, 20)
No.NameCountTypeFull Name
13EB2Ligand/Ion3-(2-CARBOXYETHYL)BENZOIC ACID
2PEG13Ligand/IonDI(HYDROXYETHYL)ETHER
3SO45Ligand/IonSULFATE ION
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
13EB1Ligand/Ion3-(2-CARBOXYETHYL)BENZOIC ACID
2PEG7Ligand/IonDI(HYDROXYETHYL)ETHER
3SO42Ligand/IonSULFATE ION
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
13EB1Ligand/Ion3-(2-CARBOXYETHYL)BENZOIC ACID
2PEG2Ligand/IonDI(HYDROXYETHYL)ETHER
3SO41Ligand/IonSULFATE ION
Biological Unit 3 (2, 6)
No.NameCountTypeFull Name
13EB-1Ligand/Ion3-(2-CARBOXYETHYL)BENZOIC ACID
2PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
3SO42Ligand/IonSULFATE ION

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:147 , ARG A:154 , ALA A:171 , GLY A:173 , TYR A:207 , PHE A:218 , ARG A:220 , GLY A:240 , CYS A:327 , HOH A:2113 , HOH A:2129BINDING SITE FOR RESIDUE 3EB A1341
02AC2SOFTWARETYR B:147 , ARG B:154 , ALA B:171 , GLY B:173 , TYR B:207 , PHE B:218 , ARG B:220 , GLY B:240 , CYS B:327 , HOH B:2107BINDING SITE FOR RESIDUE 3EB B1341
03AC3SOFTWARESER C:38 , VAL C:39 , CYS C:40 , ASN C:55 , GLY C:178 , GLY C:179 , PEG C:1343BINDING SITE FOR RESIDUE SO4 C1341
04AC4SOFTWAREARG A:260 , PRO C:213 , ARG C:214 , ALA C:215 , ARG C:217 , HOH C:2157 , HOH C:2158BINDING SITE FOR RESIDUE SO4 C1342
05AC5SOFTWAREPRO B:213 , ARG B:214 , ALA B:215 , ARG B:217BINDING SITE FOR RESIDUE SO4 B1342
06AC6SOFTWAREARG A:152 , PRO A:213BINDING SITE FOR RESIDUE SO4 A1342
07AC7SOFTWARELYS A:209 , PRO A:213 , ARG A:214 , ALA A:215 , ARG A:217 , PEG B:1344BINDING SITE FOR RESIDUE SO4 A1343
08AC8SOFTWAREARG B:260 , HOH B:2183 , ASP C:139BINDING SITE FOR RESIDUE PEG B1343
09AC9SOFTWAREARG C:177 , SO4 C:1341 , HOH C:2146BINDING SITE FOR RESIDUE PEG C1343
10BC1SOFTWAREARG C:310 , HOH C:2078BINDING SITE FOR RESIDUE PEG C1344
11BC2SOFTWAREASN C:17 , GLY C:18 , ARG C:19 , TYR C:42 , GLU C:62 , PRO C:63 , HOH C:2045 , HOH C:2212BINDING SITE FOR RESIDUE PEG C1345
12BC3SOFTWARESO4 A:1343 , ASN B:9BINDING SITE FOR RESIDUE PEG B1344
13BC4SOFTWAREGLY A:272 , GLY A:273 , ALA A:276 , SER A:281 , ALA A:282 , GLY A:283BINDING SITE FOR RESIDUE PEG A1345
14BC5SOFTWAREHOH A:2195BINDING SITE FOR RESIDUE PEG A1346
15BC6SOFTWAREASN A:17 , ARG A:306 , ILE A:319 , HOH A:2196BINDING SITE FOR RESIDUE PEG A1347
16BC7SOFTWAREGLY C:18 , ARG C:21 , VAL C:22 , HIS C:47 , TYR C:49 , HOH C:2015 , HOH C:2055BINDING SITE FOR RESIDUE PEG C1346
17BC8SOFTWAREARG A:148 , HOH A:2197BINDING SITE FOR RESIDUE PEG A1348
18BC9SOFTWAREALA A:58 , ASP A:80 , ALA A:109 , VAL A:112 , THR A:113 , GLU A:116 , HOH A:2069BINDING SITE FOR RESIDUE PEG A1349
19CC1SOFTWARELEU A:11 , THR A:12 , GLN A:235 , HOH A:2001 , HOH A:2198 , HOH B:2116BINDING SITE FOR RESIDUE PEG A1350

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AG3)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Pro A:59 -Thr A:60
2Pro B:24 -Pro B:25
3Pro B:59 -Thr B:60
4Pro C:24 -Pro C:25
5Pro C:59 -Thr C:60
6Gly C:212 -Pro C:213

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AG3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AG3)

(-) Exons   (0, 0)

(no "Exon" information available for 5AG3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...........eeeeeeeee...eeee......eeeee........eeeeeee....eeeee..eeeee...eeeeeeee.....hhhhhhhhhhhhhhhhhhh...eeeeeeeeee..........hhhhhhhhhhhhhhhhh..hhhhh.eeeeeee....eeeeeeee.....eee......hhhhh.............eeee..........eeeeeee..ee..ee....hhhhhhhhhhhhhhhhhhhhhhhhh......hhh.eeeeeeee.hhhhhhhhhhhhhhhh.....eeeee.........eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ag3 A   8 LNGLTSYFENGRARVVPPVGRNILGVVNYASVCEYPTLDHGYPELEINMVAPTAEPFAEVWVTDAESEHGERDGITYAHDGEYFFCAGRVPPTGRYTEATRAAYVTMFELLEEFGYSSVFRMWNFIGDINRDNAEGMEVYRDFCRGRAEAFEQCRLEFDQFPAATGIGSRGGGIAFYLLACRSGGHVHIENPRQVPAYHYPKRYGPRAPRFARATYLPSRAADGVGGQVFVSGTASVLGHETAHEGDLVKQCRLALENIELVISGGNLAAHGISAGHGLTALRNIKVYVRRSEDVPAVREICREAFSPDADIVYLTVDVCRSDLLVEIEGVVM 340
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337   


Chain B from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...........eeeeeeeee.............eeeee........eeeeeee....eeeee..eeeee...eeeeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeeeeeeee..........hhhhhhhhhhhhhhhhh..hhhhh.eeeeeee....eeeeeeee.....eee......hhhhhhhhhh........eeee..........eeeeeee..ee..ee....hhhhhhhhhhhhhhhhhhhhhhhhh......hhh.eeeeeeee.hhhhhhhhhhhhhhhh.....eeeee.........eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ag3 B   9 NGLTSYFENGRARVVPPVGRNILGVVNYASVCEYPTLDHGYPELEINMVAPTAEPFAEVWVTDAESEHGERDGITYAHDGEYFFCAGRVPPTGRYTEATRAAYVTMFELLEEFGYSSVFRMWNFIGDINRDNAEGMEVYRDFCRGRAEAFEQCRLEFDQFPAATGIGSRGGGIAFYLLACRSGGHVHIENPRQVPAYHYPKRYGPRAPRFARATYLPSRAADGVGGQVFVSGTASVLGHETAHEGDLVKQCRLALENIELVISGGNLAAHGISAGHGLTALRNIKVYVRRSEDVPAVREICREAFSPDADIVYLTVDVCRSDLLVEIEGVVM 340
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338  


Chain C from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee...........eeeeeeeee.............eeeee........eeeeeee....eeeee..eeeee...eeeeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeeeeeeee..........hhhhhhhhhhhhhhhhh........eeeeeee....eeeeeeee.....eee......hhhhhhhhhh........eeee..........eeeeeee..ee..ee....hhhhhhhhhhhhhhhhhhhhhhhh.......hhh.eeeeeeee.hhhhhhhhhhhhhhhh.....eeeee.........eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ag3 C   6 LVLNGLTSYFENGRARVVPPVGRNILGVVNYASVCEYPTLDHGYPELEINMVAPTAEPFAEVWVTDAESEHGERDGITYAHDGEYFFCAGRVPPTGRYTEATRAAYVTMFELLEEFGYSSVFRMWNFIGDINRDNAEGMEVYRDFCRGRAEAFEQCRLEFDQFPAATGIGSRGGGIAFYLLACRSGGHVHIENPRQVPAYHYPKRYGPRAPRFARATYLPSRAADGVGGQVFVSGTASVLGHETAHEGDLVKQCRLALENIELVISGGNLAAHGISAGHGLTALRNIKVYVRRSEDVPAVREICREAFSPDADIVYLTVDVCRSDLLVEIEGVVM 340
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AG3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AG3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AG3)

(-) Gene Ontology  (3, 3)

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  5ag3
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        HYG5_STRHY | O30478: 5a3k

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