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(-) Description

Title :  NEURONAL CALCIUM SENSOR-1 (NCS-1)FROM RATTUS NORVEGICUS COMPLEX WITH RHODOPSIN KINASE PEPTIDE FROM HOMO SAPIENS
 
Authors :  M. Saleem, V. Karuppiah, S. Pandalaneni, R. Burgoyne, J. P. Derrick, L.
Date :  23 Jan 15  (Deposition) - 18 Mar 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  B,C  (1x)
Biol. Unit 2:  A,D  (1x)
Keywords :  Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Pandalaneni, V. Karuppiah, M. Saleem, L. P. Haynes, R. D. Burgoyne, O. Mayans, J. P. Derrick, L. Y. Lian
Neuronal Calcium Sensor-1 Binds The D2 Dopamine Receptor And G-Protein Coupled Receptor Kinase 1 (Grk1) Peptides Using Different Modes Of Interactions.
J. Biol. Chem. V. 290 18744 2015
PubMed-ID: 25979333  |  Reference-DOI: 10.1074/JBC.M114.627059

(-) Compounds

Molecule 1 - NEURONAL CALCIUM SENSOR 1
    Cell: NEURON
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET-M11
    Expression System Vector Type: PLASMID
    Organism Common: NORWAY RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: NCS-1, FREQUENIN HOMOLOG, FREQUENIN-LIKE PROTEIN, FREQUENIN-LIKE UBIQUITOUS PROTEIN
 
Molecule 2 - RHODOPSIN KINASE
    Chains: C, D
    Fragment: RESIDUES 1-25
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RK, G PROTEIN-COUPLED RECEPTOR KINASE 1
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x):  BC 
Biological Unit 2 (1x): A  D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1CA6Ligand/IonCALCIUM ION
2NA2Ligand/IonSODIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2NA-1Ligand/IonSODIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2NA-1Ligand/IonSODIUM ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:73 , ASN A:75 , ASP A:77 , ARG A:79 , GLU A:84 , HOH A:2007BINDING SITE FOR RESIDUE CA A1185
2AC2SOFTWAREASP A:109 , ASP A:111 , ASP A:113 , TYR A:115 , GLU A:120 , HOH A:2011BINDING SITE FOR RESIDUE CA A1186
3AC3SOFTWAREASP A:157 , ASN A:159 , ASP A:161 , LYS A:163 , GLU A:168BINDING SITE FOR RESIDUE CA A1187
4AC4SOFTWARETHR A:17 , THR A:20 , PHE A:22BINDING SITE FOR RESIDUE NA A1188
5AC5SOFTWAREALA A:175BINDING SITE FOR RESIDUE NA A1189
6AC6SOFTWAREASP B:73 , ASN B:75 , ASP B:77 , ARG B:79 , GLU B:84 , HOH B:2003BINDING SITE FOR RESIDUE CA B1185
7AC7SOFTWAREASP B:109 , ASP B:111 , ASP B:113 , TYR B:115 , GLU B:120 , HOH B:2005BINDING SITE FOR RESIDUE CA B1186
8AC8SOFTWAREASP B:157 , ASN B:159 , ASP B:161 , LYS B:163 , GLU B:168BINDING SITE FOR RESIDUE CA B1187

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AFP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AFP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AFP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AFP)

(-) Exons   (0, 0)

(no "Exon" information available for 5AFP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh...hhhhhhhhhhhhhhhh...eehhhhhhhhhhhhh....hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afp A   8 LKPEVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGLPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQALS 184
                                    17        27        37        47        57        67        77        87        97       107       117       127     ||141       151       161       171       181   
                                                                                                                                                       133|                                              
                                                                                                                                                        138                                              


Chain B from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh..hhhhhhhhhhhhhhhh...eehhhhhhhhhhh......hhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afp B   8 LKPEVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPSIVQALS 184
                                    17        27        37        47        57        67        77        87        97       107       117       127    || 143       153       163       173       183 
                                                                                                                                                      132|                                             
                                                                                                                                                       139                                             


Chain C from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 5afp C   6 LETVVANSAFIA  17
                                    15  


Chain D from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 5afp D   6 LETVVANSAFIA  17
                                    15
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AFP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AFP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AFP)

(-) Gene Ontology  (46, 47)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        NCS1_RAT | P62168: 4ov2 4yru 5aeq 5aer

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