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(-) Description

Title :  TBK1 RECRUITMENT TO CYTOSOL-INVADING SALMONELLA INDUCES ANTI-BACTERIAL AUTOPHAGY
 
Authors :  T. L. Thurston, M. D. Allen, B. Ravenhill, M. Karpiyevitch, S. Bloor, A. S. Matthews, D. Komander, D. Holden, M. Bycroft, F. Randow
Date :  28 Jul 15  (Deposition) - 13 Jul 16  (Release) - 31 Aug 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Calcium-Binding Protein, Tbk1, Ndp52, Zinc-Finger (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. L. Thurston, K. B. Boyle, M. Allen, B. J. Ravenhill, M. Karpiyevich, S. Bloor, A. Kaul, J. Noad, A. Foeglein, S. A. Matthews, D. Komander, M. Bycroft, F. Randow
Recruitment Of Tbk1 To Cytosol-Invading Salmonella Induces Wipi2-Dependent Antibacterial Autophagy.
Embo J. V. 35 1779 2016
PubMed-ID: 27370208  |  Reference-DOI: 10.15252/EMBJ.201694491

(-) Compounds

Molecule 1 - CALCIUM-BINDING AND COILED-COIL DOMAIN-CONTAINING PROTEIN 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: HLTV
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: C41
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 388-446
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ANTIGEN NUCLEAR DOT 52 KDA PROTEIN, NUCLEAR DOMAIN 10 PROTEIN NDP52, NUCLEAR DOMAIN 10 PROTEIN 52, NDP52 ZINC FINGER

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION
NMR Structure * (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:422 , CYS A:425 , HIS A:440 , HIS A:444BINDING SITE FOR RESIDUE ZN A 447

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AAQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AAQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AAQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AAQ)

(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:57
                                                                                         
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author ...................hhhhhh....eeee....eeee..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                 5aaq A 390 SPLSIKKCPICKADDICDHTLEQQQMQPLCFNCPICDKIFPATEKQIFEDHVFCHSL 446
                                   399       409       419       429       439
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AAQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AAQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AAQ)

(-) Gene Ontology  (16, 16)

NMR Structure(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CACO2_HUMAN | Q13137: 2mxp 3vvv 3vvw 4gxl 4han 4xkl

(-) Related Entries Specified in the PDB File

5aas THE SELECTIVE AUTOPHAGY RECEPTOR TAX1BP1 IS REQUIRED FOR AUTOPHAGY-DEPENDENT CAPTURE OF CYTOSOLIC SALMONELLA TYPHIMURIUM
5aay TBK1 RECRUITMENT TO CYTOSOL-INVADING SALMONELLA INDUCES ANTI-BACTERIAL AUTOPHAGY
5aaz TBK1 RECRUITMENT TO CYTOSOL-INVADING SALMONELLA INDUCES ANTI-BACTERIAL AUTOPHAGY