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(-) Description

Title :  CRYSTAL STRUCTURE OF ORGYIA PSEUDOTSUGATA CPV5 POLYHEDRA WITH SEMET SUBSTITUTION
 
Authors :  X. Ji, D. Axford, R. Owen, G. Evans, H. M. Ginn, G. Sutton, D. I. Stuart
Date :  17 Jul 15  (Deposition) - 02 Sep 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.07
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Viral Protein, Insect Virus Occlusion Body, Microcrystal (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Ji, D. Axford, R. Owen, G. Evans, H. M. Ginn, G. Sutton, D. I. Stuart
Polyhedra Structures And The Evolution Of The Insect Viruses.
J. Struct. Biol. V. 192 88 2015
PubMed-ID: 26291392  |  Reference-DOI: 10.1016/J.JSB.2015.08.009

(-) Compounds

Molecule 1 - POLYHEDRIN
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Organism Scientific: ORGYIA PSEUDOTSUGATA CYPOVIRUS 5
    Organism Taxid: 31592
    Synonym: C-POLYHEDRIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2CA1Ligand/IonCALCIUM ION
3MSE7Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 24)
No.NameCountTypeFull Name
1ACE3Mod. Amino AcidACETYL GROUP
2CA-1Ligand/IonCALCIUM ION
3MSE21Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:138 , ASP A:168BINDING SITE FOR RESIDUE CA A1254

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5A8V)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1His A:2 -Gly A:3
2Phe A:65 -Pro A:66

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A8V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5A8V)

(-) Exons   (0, 0)

(no "Exon" information available for 5A8V)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhh......eeeeeeee.....eeeeeeee..eeeeeehhhhhh..................hhhhhhhhhh................eeeeeee...hhhhheeeee.....eee....eee........hhhh.hhhhheeeee..eeeeeeeeee..........eeeeeee..........hhhhhhhhhhh......eeeee.hhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a8v A   1 xHGLDDAQYLQQKAHNKRISEFRSSSNSGINVTVVLKYTNGVVQVYNWQGTEVIAGSLNRQLmKFPNYmNPDKHGRIEWPGEGVEHQHGLIRSNGGNGSYDIGAGDPYAmQFIVQGSVDWNATRLRFFGPDGSRWmPDDQGGASVRAGLLNAAEDIINSKmQPLYFCDRmAGKSYYVRFDDKYAPRFPTIGFEVYRYRVGATNEmGGESARTAVASLISFPTFSTAYVNEKVAVENFFQPRELVYQNSYGYTV 253
                            |       10        20        30        40        50        60  |     70        80        90       100       110       120       130     | 140       150       160|      170       180       190       200    |  210       220       230       240       250   
                            |                                                            63-MSE |                                      110-MSE                   136-MSE                  161-MSE  170-MSE                            205-MSE                                            
                            1-ACE                                                              69-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A8V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A8V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A8V)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)

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  5a8v
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  PYHD_CPVOP | P36701
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PYHD_CPVOP | P36701: 5a8u

(-) Related Entries Specified in the PDB File

5a8s CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA TYPE 1
5a8t CRYSTAL STRUCTURE OF ANTHERAEA MYLITTA CPV4 POLYHEDRA TYPE 2
5a8u CRYSTAL STRUCTURE OF ORGYIA PSEUDOTSUGATA CPV5 POLYHEDRA