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(-) Description

Title :  CRYSTAL STRUCTURE OF SULFOLOBUS ACIDOCALDARIUS TRM10 AT 2.1 ANGSTROM RESOLUTION.
 
Authors :  B. Van Laer, M. Roovers, L. Wauters, J. Kasprzak, M. Dyzma, E. Deyaert, J. Bujnicki, L. Droogmans, W. Versees
Date :  10 Jul 15  (Deposition) - 13 Jan 16  (Release) - 10 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Spout, Trm10, Trna Methyltransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Van Laer, M. Roovers, L. Wauters, J. M. Kasprzak, M. Dyzma, E. Deyaert, R. Kumar Singh, A. Feller, J. M. Bujnicki, L. Droogmans, W. Versees
Structural And Functional Insights Into Trna Binding And Adenosine N1-Methylation By An Archaeal Trm10 Homologue.
Nucleic Acids Res. V. 44 940 2016
PubMed-ID: 26673726  |  Reference-DOI: 10.1093/NAR/GKV1369

(-) Compounds

Molecule 1 - TRNA (ADENINE(9)-N1)-METHYLTRANSFERASE
    Atcc: 33909
    Chains: A
    EC Number: 2.1.1.218
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA PLYSS
    Expression System Vector Type: PLASMID
    Organism Scientific: SULFOLOBUS ACIDOCALDARIUS
    Organism Taxid: 2285
    Synonym: TRNA(M1A9)-METHYLTRANSFERASE, TRNA(M1A9)MTASE, TRM10

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5A7Z)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5A7Z)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:87 -Pro A:88

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A7Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5A7Z)

(-) Exons   (0, 0)

(no "Exon" information available for 5A7Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh...eee......hhhhhhhhhhhh.eeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeee.............eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee..........eee..........eeee.....ee.hhhhhhh..eeee.ee.....eehhhhhhhhhhhh....eee............hhhhhhhhhhhhhhhh.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a7z A  -4 RGSHmTLAKVFSQKLRELGISSIYIGHERPSLQSLAIKmLLKNYGLVEERREGmLITQDHGIKLISGKGTETSRYTFRKGGKKVSIHLPEYPKmVIDLGLFEFLNEEEKEKTLLQVDLCLSVIRKFLWDGNLTVVGKADYVLGRANIVQSLSLSDEDNPVILDPYGDVVATDQILRDHNVFVIGGIVDKGRRLDRATERLALSRGYSFPRVKIQLRGSIIGVPDEINKILEIILRVKELDQSLEEAIISL 246
                               ||    6        16        26        36        46   |    56        66        76        86   |    96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246
                              -1|                                35-MSE         50-MSE                                  90-MSE                                                                                                                                                        
                                1-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A7Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A7Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A7Z)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Tyr A:87 - Pro A:88   [ RasMol ]  
 

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  5a7z
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  2.1.1.218
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRM10_SULAC | Q4J894: 5a7t 5a7y

(-) Related Entries Specified in the PDB File

5a7t CRYSTAL STRUCTURE OF SULFOLOBUS ACIDOCALDARIUS TRM10 AT 2.4 ANGSTROM RESOLUTION.
5a7y CRYSTAL STRUCTURE OF SULFOLOBUS ACIDOCALDARIUS TRM10 IN COMPLEX WITH S-ADENOSYLHOMOCYSTEINE