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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LECB LECTIN FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH METHYL 6-(CINNAMIDO)-6-DEOXY-ALPHA-D-MANNOPYRANOSIDE AT 1.6 ANSGTROM
 
Authors :  R. Sommer, D. Hauck, A. Varrot, A. Audfray, A. Imberty, A. Titz
Date :  02 Jun 15  (Deposition) - 22 Jul 15  (Release) - 29 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Glycoinhibitors, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Sommer, D. Hauck, A. Varrot, S. Wagner, A. Audfray, A. Prestel, H. M. Moleer, A. Imberty, A. Titz
Cinnamide Derivatives Of D-Mannose As Inhibitors Of The Bacterial Virulence Factor Lecb From Pseudomonas Aeruginosa
Chemistryopen V. 4 756 2015
PubMed-ID: 27308201  |  Reference-DOI: 10.1002/OPEN.201500162

(-) Compounds

Molecule 1 - FUCOSE-BINDING LECTIN PA-IIL
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET25PA2
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET25B
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Other Details: N TERMINAL METHIONINE CLEAVED
    Strain: PAO1
    Synonym: FUCOSE-BINDING LECTIN LECB

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 20)

Asymmetric/Biological Unit (4, 20)
No.NameCountTypeFull Name
1CA8Ligand/IonCALCIUM ION
2CL4Ligand/IonCHLORIDE ION
3DH64Ligand/IonCINNAMIDE
4MMA4Ligand/IonO1-METHYL-MANNOSE

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:95 , ASP A:99 , ASP A:101 , ASP A:104 , CA A:200 , MMA A:201BINDING SITE FOR RESIDUE CA A 199
02AC2SOFTWAREASN A:21 , ASP A:101 , ASN A:103 , ASP A:104 , CA A:199 , MMA A:201 , GLY B:114BINDING SITE FOR RESIDUE CA A 200
03AC3SOFTWARESER A:78 , HOH A:2007 , HOH A:2146 , THR D:84BINDING SITE FOR RESIDUE CL A 203
04AC4SOFTWAREGLU B:95 , ASP B:99 , ASP B:101 , ASP B:104 , MMA B:201BINDING SITE FOR RESIDUE CA B 199
05AC5SOFTWAREGLY A:114 , ASN B:21 , ASP B:101 , ASN B:103 , ASP B:104 , MMA B:201BINDING SITE FOR RESIDUE CA B 200
06AC6SOFTWARESER B:78 , HOH B:2007 , HOH B:2122 , THR C:84BINDING SITE FOR RESIDUE CL B 203
07AC7SOFTWAREGLU C:95 , ASP C:99 , ASP C:101 , ASP C:104 , CA C:200 , MMA C:201BINDING SITE FOR RESIDUE CA C 199
08AC8SOFTWAREASN C:21 , ASP C:101 , ASN C:103 , ASP C:104 , CA C:199 , MMA C:201 , GLY D:114BINDING SITE FOR RESIDUE CA C 200
09AC9SOFTWARETHR B:84 , HOH B:2123 , GLN C:3 , SER C:78 , HOH C:2003BINDING SITE FOR RESIDUE CL C 203
10BC1SOFTWAREGLU D:95 , ASP D:99 , ASP D:101 , ASP D:104 , CA D:200 , MMA D:201BINDING SITE FOR RESIDUE CA D 199
11BC2SOFTWAREGLY C:114 , ASN D:21 , ASP D:101 , ASN D:103 , ASP D:104 , CA D:199 , MMA D:201BINDING SITE FOR RESIDUE CA D 200
12BC3SOFTWARETHR A:84 , HOH A:2147 , GLN D:3 , SER D:78 , HOH D:2006BINDING SITE FOR RESIDUE CL D 203
13BC4SOFTWAREASN A:21 , SER A:22 , SER A:23 , GLY A:24 , GLU A:95 , ASP A:96 , ASP A:99 , ASP A:101 , ASP A:104 , CA A:199 , CA A:200 , HOH A:2057 , HOH A:2061 , HOH A:2159 , HOH A:2175 , ASN B:70 , ASP B:96 , GLY B:114 , DH6 B:202BINDING SITE FOR POLY-SACCHARIDE RESIDUES MMA A 201 THROUGH DH6 A 202
14BC5SOFTWAREASP A:96 , GLY A:97 , GLY A:114 , MMA A:201 , DH6 A:202 , ASN B:21 , SER B:22 , SER B:23 , GLU B:95 , ASP B:96 , GLY B:97 , ASP B:99 , ASP B:101 , ASP B:104 , CA B:199 , CA B:200 , HOH B:2049 , HOH B:2139 , HOH B:2152 , HOH B:2153BINDING SITE FOR POLY-SACCHARIDE RESIDUES MMA B 201 THROUGH DH6 B 202
15BC6SOFTWAREASN C:21 , SER C:22 , SER C:23 , GLU C:95 , ASP C:96 , ASP C:99 , ASP C:101 , ASP C:104 , CA C:199 , CA C:200 , HOH C:2149 , HOH C:2150 , HOH C:2165 , GLY D:24 , ASP D:96 , GLY D:114 , MMA D:201 , DH6 D:202BINDING SITE FOR POLY-SACCHARIDE RESIDUES MMA C 201 THROUGH DH6 C 202
16BC7SOFTWARESER C:23 , GLY C:24 , ASP C:96 , GLY C:114 , MMA C:201 , DH6 C:202 , ASN D:21 , SER D:22 , SER D:23 , GLU D:95 , ASP D:96 , ASP D:99 , ASP D:101 , ASP D:104 , CA D:199 , CA D:200 , HOH D:2115 , HOH D:2116 , HOH D:2128BINDING SITE FOR POLY-SACCHARIDE RESIDUES MMA D 201 THROUGH DH6 D 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5A3O)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Trp A:111 -Pro A:112
2Trp B:111 -Pro B:112
3Trp C:111 -Pro C:112
4Trp D:111 -Pro D:112

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A3O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5A3O)

(-) Exons   (0, 0)

(no "Exon" information available for 5A3O)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eee......eeeeeeee....eeeeeee..eeeeeeee...eeeeeeeeee......eeeeeeee.....eeeeeeeee...eeeeeeee.........eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 5a3o A   1 ATQGVFTLPANTRFGVTAFANSSGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG 114
                                    10        20        30        40        50        60        70        80        90       100       110    


Chain B from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eee......eeeeeeee....eeeeeee..eeeeeeee...eeeeeeeeee......eeeeeeee.....eeeeeeeee...eeeeeeee.........eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 5a3o B   1 ATQGVFTLPANTRFGVTAFANSSGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG 114
                                    10        20        30        40        50        60        70        80        90       100       110    


Chain C from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eee......eeeeeeee....eeeeeee..eeeeeeee...eeeeeeeeee......eeeeeeee.....eeeeeeeee...eeeeeeee.........eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 5a3o C   1 ATQGVFTLPANTRFGVTAFANSSGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG 114
                                    10        20        30        40        50        60        70        80        90       100       110    


Chain D from PDB  Type:PROTEIN  Length:114
                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eee......eeeeeeee....eeeeeee..eeeeeeee...eeeeeeeeee......eeeeeeee.....eeeeeeeee...eeeeeeee.........eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 5a3o D   1 ATQGVFTLPANTRFGVTAFANSSGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG 114
                                    10        20        30        40        50        60        70        80        90       100       110
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A3O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A3O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A3O)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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        Q9HYN5_PSEAE | Q9HYN5: 1gzt 1our 1ous 1oux 1ovp 1ovs 1oxc 1uzv 1w8f 1w8h 2boj 2bp6 2jdh 2jdk 2jdm 2jdn 2jdp 2jdu 2jdy 2vuc 2vud 3dcq 3zdv 4ce8 5d2a 5hch

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