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(-) Description

Title :  CRYSTAL STRUCTURE OF CALCIUM-FREE HUMAN ADSEVERIN DOMAINS A1-A3
 
Authors :  S. Chumnarnsilpa, R. C. Robinson, J. M. Grimes, C. Leyrat
Date :  30 Apr 15  (Deposition) - 16 Sep 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Actin-Binding Protein, Actin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Chumnarnsilpa, R. C. Robinson, J. M. Grimes, C. Leyrat
Calcium-Controlled Conformational Choreography In The N- Terminal Half Of Adseverin.
Nat. Commun. V. 6 8254 2015
PubMed-ID: 26365202  |  Reference-DOI: 10.1038/NCOMMS9254

(-) Compounds

Molecule 1 - ADSEVERIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSY5
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA
    Fragment: DOMAINS A1-A3, RESIDUES 6-349
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SCINDERIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5A1K)

(-) Sites  (0, 0)

(no "Site" information available for 5A1K)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5A1K)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asn A:270 -Pro A:271
2Asn B:270 -Pro B:271

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A1K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5A1K)

(-) Exons   (0, 0)

(no "Exon" information available for 5A1K)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:341
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh.....eeeeeee....eee.hhhhh.eee...eeeeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhh.....eeee...................eeeeee.....eeeee...........eeeee...eeeeee....hhhhhhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhh.........................eeeee.....eeeee.....hhhhh....eeeeeehhh.eeeeee....hhhhhhhhhhhhhhhhhhh......eeeeee....hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a1k A   6 YHEEFARAGKQAGLQVWRIEKLELVPVPQSAHGDFYVGDAYLVLHTAKTSRGFTYRLHFWLGKECSQDESTAAAIFTVQMDDYLGGKPVQNRELQGYESNDFVSYFKGGLKYKAGGVASGLNHVLTNDLTAKRLLHVKGRRVVRATEVPLSWDSFNKGDCFIIDLGTEIYQWCGSSCNKYERLKANQVATGIRYNERKGRSELIVVEEGSEPSELIKVLGEKPELPDGGDDDDIIADISNRKMAKLYMVSDSMRVTVVAEENPFSMAMLLSEECFILDHGAAKQIFVWKGKDANPQERKAAMKTAEEFLQQMNYSKNTQIQVLPEGGETPIFKQFFKDWRD 349
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255||     268       278       288       298       308       318       328       338       348 
                                                                                                                                                                                                                                                                                    256|                                                                                         
                                                                                                                                                                                                                                                                                     260                                                                                         


Chain B from PDB  Type:PROTEIN  Length:340
                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh.....eeeeeeee..eeee.hhhhh.eee...eeeeeeeee....eeeeeeeee....hhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhh.....eeee...................eeeeee.....eeeee...........eeeee...eeeeee....hhhhhhhhhhhhhhhhhhh.....eeeeee....hhhhhhhhh........................eeeee.....eeeee.....hhhhh....eeeeeehhh.eeeeee....hhhhhhhhhhhhhhhhhhh......eeeeee....hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a1k B   7 HEEFARAGKQAGLQVWRIEKLELVPVPQSAHGDFYVGDAYLVLHTAKTSRGFTYRLHFWLGKECSQDESTAAAIFTVQMDDYLGGKPVQNRELQGYESNDFVSYFKGGLKYKAGGVASGLNHVLTNDLTAKRLLHVKGRRVVRATEVPLSWDSFNKGDCFIIDLGTEIYQWCGSSCNKYERLKANQVATGIRYNERKGRSELIVVEEGSEPSELIKVLGEKPELPDGGDDDDIIADISNRKMAKLYMVSDSMRVTVVAEENPFSMAMLLSEECFILDHGAAKQIFVWKGKDANPQERKAAMKTAEEFLQQMNYSKNTQIQVLPEGGETPIFKQFFKDWRD 349
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256|      269       279       289       299       309       319       329       339       349
                                                                                                                                                                                                                                                                                   256|                                                                                         
                                                                                                                                                                                                                                                                                    260
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A1K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A1K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A1K)

(-) Gene Ontology  (22, 22)

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  Cis Peptide Bonds
    Asn A:270 - Pro A:271   [ RasMol ]  
    Asn B:270 - Pro B:271   [ RasMol ]  
 
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 Related Entries

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UniProtKB/Swiss-Prot
        ADSV_HUMAN | Q9Y6U3: 3fg6 5a1m

(-) Related Entries Specified in the PDB File

5a1m CRYSTAL STRUCTURE OF CALCIUM-BOUND HUMAN ADSEVERIN DOMAIN A3