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(-) Description

Title :  CRYSTAL STRUCTURE OF THE RRS1 AND RPF2 COMPLEX
 
Authors :  K. Ye, S. Zheng
Date :  07 Jan 17  (Deposition) - 25 Jan 17  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Protein Complex, Components Of 90S Preribosome, Nuclear Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Sun, X. Zhu, J. Qi, W. An, P. Lan, D. Tan, R. Chen, B. Wang, S. Zheng, C. Zhang, X. Chen, W. Zhang, J. Chen, M. Q. Dong, K. Ye
Molecular Architecture Of The 90S Small Subunit Pre-Ribosom
Elife V. 6 2017
PubMed-ID: 28244370  |  Reference-DOI: 10.7554/ELIFE.22086

(-) Compounds

Molecule 1 - RIBOSOME BIOGENESIS PROTEIN RPF2
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 19-288
    Gene: RPF2, YKR081C, YKR401
    Organism Scientific: SACCHAROMYCES CEREVISIAE S288C
    Organism Taxid: 559292
    Strain: S288C
    Synonym: RPF2
 
Molecule 2 - REGULATOR OF RIBOSOME BIOSYNTHESIS
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 20-121
    Gene: RRS1, YOR294W
    Organism Scientific: SACCHAROMYCES CEREVISIAE S288C
    Organism Taxid: 559292
    Strain: S288C
    Synonym: RRS1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5WXL)

(-) Sites  (0, 0)

(no "Site" information available for 5WXL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5WXL)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Lys A:54 -Pro A:55
2Gly A:227 -Pro A:228
3Lys C:54 -Pro C:55
4Gly C:227 -Pro C:228

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5WXL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5WXL)

(-) Exons   (0, 0)

(no "Exon" information available for 5WXL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:226
                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....hhhhhhhhhhhhhhhh..eee............hhhhhhhhhhhh..eeeeee.......eeeeeeee..eeeeeeeeee.....hhhhh...........eeeee.hhhhhhhhhhhhhhhhhhhhh.....eee.hhh.eeeeeee............eeeeeeeeeee...eeeeee....eeeeeeeee..hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5wxl A  19 REAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRFNRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYKLPRIELVEIGPRLDFKIGRIHTPSPDMVTEAHKK 251
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208 ||    225       235       245      
                                                                                                                                                                                                                         210|                                 
                                                                                                                                                                                                                          218                                 


Chain B from PDB  Type:PROTEIN  Length:78
                                                                                                              
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeehhh.eeee....hhhhhh....hhhhhhhhhhhhhhhhhhhhhh...ee....eee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 5wxl B  16 GPEAVYDLGNLAAFDSNVLDKNDLDSSNARREEKIKSLTRDNVQLLINQLLSLPMKTTMTLLQLPDPTTDLPREKPLP 106
                                    25        35        45        55        65       |88        98        
                                                                                    73|                   
                                                                                     87                   


Chain C from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee....hhhhhhhhhhhhhh....eee............hhhhhhhhhhhh..eeeeee.......eeeeeeee..eeeeeeeeee.....hhhhh...........eeeee.hhhhhhhhhhhhhhhhhhhhh.....eee.hhh.eeeeeee............eeeeeeee.............eee....eeeeeeeee..hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5wxl C  26 NVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRFNRKNDIHPFEDMSPLEFFSEKNDCSLMVLMTSSKKRKNNMTFIRTFGYKIYDMIELMVADNFKLLSDFKKLTFTVGLKPMFTFQGAAFDTHPVYKQIKSLFLDFFRGESTDLQDVAGLQHVISMTIQGDFQDGEPLPNVLFRVYKLKSYKSGKRLPRIELVEIGPRLDFKIGRIHTPSPDMVTEAHKK 251
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205     ||218       228       238       248   
                                                                                                                                                                                                                   211|                                    
                                                                                                                                                                                                                    215                                    


Chain D from PDB  Type:PROTEIN  Length:78
                                                                                                              
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeehhh.eeee....hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..ee....eee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 5wxl D  16 GPEAVYDLGNLAAFDSNVLDKNDLDSSNARREEKIKSLTRDNVQLLINQLLSLPMKTTMTLLQLPDPTTDLPREKPLP 106
                                    25        35        45        55        65       |88        98        
                                                                                    73|                   
                                                                                     87
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5WXL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5WXL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5WXL)

(-) Gene Ontology  (18, 21)

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  Cis Peptide Bonds
    Gly A:227 - Pro A:228   [ RasMol ]  
    Gly C:227 - Pro C:228   [ RasMol ]  
    Lys A:54 - Pro A:55   [ RasMol ]  
    Lys C:54 - Pro C:55   [ RasMol ]  
 
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  5wxl
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  RPF2_YEAST | P36160
    Comparative Protein Structure Models: ModBase
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    Protein-protein Interaction: DIP
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  RRS1_YEAST | Q08746
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RPF2_YEAST | P36160: 3jct 5a53
        RRS1_YEAST | Q08746: 3jct 5a53

(-) Related Entries Specified in the PDB File

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